RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 KLF16Q9BXK1 252 aaPredicted RBP8.62□□□□□ -1.03
SF3A1-208ENST00000485618 NHEJ1Q9H9Q4 299 aaPredicted RBP8.62□□□□□ -1.03
SF3A1-208ENST00000485618 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.62□□□□□ -1.03
SF3A1-208ENST00000485618 CYTH4Q9UIA0 394 aa8.62□□□□□ -1.03
SF3A1-208ENST00000485618 ZNF638Q14966 1978 aaKnown RBP8.62□□□□□ -1.03
SF3A1-208ENST00000485618 GREB1Q4ZG55 1949 aa8.62□□□□□ -1.03
SF3A1-208ENST00000485618 MYO10Q9HD67 2058 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 NOTCH4Q99466 2003 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 PALM2-AKAP2B1ALY0 433 aaPredicted RBP8.61□□□□□ -1.03
SF3A1-208ENST00000485618 DDX3XO00571 662 aaKnown RBP eCLIP8.61□□□□□ -1.03
SF3A1-208ENST00000485618 IRAK2O43187 625 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 DAB1O75553 588 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 RNF8O76064 485 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 PRAMEF12O95522 483 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 TRUB2O95900 331 aaKnown RBP8.61□□□□□ -1.03
SF3A1-208ENST00000485618 H2AFZP0C0S5 128 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 IRF1P10914 325 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 FCARP24071 287 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 CORO1AP31146 461 aaKnown RBP8.61□□□□□ -1.03
SF3A1-208ENST00000485618 CLCN5P51795 746 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 RUNX3Q13761 415 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 PPP2R5DQ14738 602 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 ACAP1Q15027 740 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 ZNF77Q15935 545 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 SLC44A4Q53GD3 710 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 HGSNATQ68CP4 663 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 ZNF852Q6ZMS4 543 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 H2AFVQ71UI9 128 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 GPIHBP1Q8IV16 184 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 DEFB106AQ8N104 65 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 SIX5Q8N196 739 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 CCDC112Q8NEF3 446 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 RSAD2Q8WXG1 361 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 NDRG1Q92597 394 aaKnown RBP8.61□□□□□ -1.03
SF3A1-208ENST00000485618 BTN2A3PQ96KV6 586 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 XPO6Q96QU8 1125 aaKnown RBP8.61□□□□□ -1.03
SF3A1-208ENST00000485618 SLC22A12Q96S37 553 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 PPP1R9BQ96SB3 815 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 PCDHB18PQ96TA0 734 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 SMG9Q9H0W8 520 aaKnown RBP8.61□□□□□ -1.03
SF3A1-208ENST00000485618 ISCUQ9H1K1 167 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 WDCPQ9H6R7 721 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 DDIT4Q9NX09 232 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 OSER1Q9NX31 292 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 DONSONQ9NYP3 566 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 INTUQ9ULD6 942 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 NAALADL1Q9UQQ1 740 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 DOCK8Q8NF50 2099 aa8.61□□□□□ -1.03
SF3A1-208ENST00000485618 M0QYT0 321 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 MYO1FO00160 1098 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 GRAP2O75791 330 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 GABBR2O75899 941 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 STC2O76061 302 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 HMBSP08397 361 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 AOC1P19801 751 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 GPD1P21695 349 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 RDXP35241 583 aaKnown RBP8.6□□□□□ -1.03
SF3A1-208ENST00000485618 ZNF143P52747 638 aaPredicted RBP8.6□□□□□ -1.03
SF3A1-208ENST00000485618 KRT83P78385 493 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 GAD2Q05329 585 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 DEUP1Q05D60 604 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 USP4Q13107 963 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 NME3Q13232 169 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 GRM2Q14416 872 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 BRMS1LQ5PSV4 323 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 ADGRF1Q5T601 910 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 LRRC31Q6UY01 552 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 MON1BQ7L1V2 547 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 BHLHA9Q7RTU4 235 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 RALGPS2Q86X27 583 aaPredicted RBP8.6□□□□□ -1.03
SF3A1-208ENST00000485618 CCDC105Q8IYK2 499 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 TC2NQ8N9U0 490 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 SPC24Q8NBT2 197 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 DQX1Q8TE96 717 aaKnown RBP8.6□□□□□ -1.03
SF3A1-208ENST00000485618 CLEC4CQ8WTT0 213 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 ZNF653Q96CK0 615 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 PGAP3Q96FM1 320 aaPredicted RBP8.6□□□□□ -1.03
SF3A1-208ENST00000485618 BAG1Q99933 345 aaPredicted RBP8.6□□□□□ -1.03
SF3A1-208ENST00000485618 FAM83CQ9BQN1 747 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 CNPY3Q9BT09 278 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 SYT11Q9BT88 431 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 DDX23Q9BUQ8 820 aaKnown RBP8.6□□□□□ -1.03
SF3A1-208ENST00000485618 ARHGAP20Q9P2F6 1191 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 UVRAGQ9P2Y5 699 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 TJP2Q9UDY2 1190 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 CNOT8Q9UFF9 292 aaKnown RBP8.6□□□□□ -1.03
SF3A1-208ENST00000485618 SFMBT1Q9UHJ3 866 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 NUDT5Q9UKK9 219 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 CCL26Q9Y258 94 aa8.6□□□□□ -1.03
SF3A1-208ENST00000485618 PATJQ8NI35 1801 aa8.59□□□□□ -1.03
SF3A1-208ENST00000485618 A0A087X0T9 212 aa8.59□□□□□ -1.03
SF3A1-208ENST00000485618 AP5Z1O43299 807 aa8.59□□□□□ -1.03
SF3A1-208ENST00000485618 PI15O43692 258 aa8.59□□□□□ -1.03
SF3A1-208ENST00000485618 NARSO43776 548 aaKnown RBP8.59□□□□□ -1.03
SF3A1-208ENST00000485618 FYNP06241 537 aa8.59□□□□□ -1.03
SF3A1-208ENST00000485618 PTMAP06454 111 aaKnown RBP8.59□□□□□ -1.03
SF3A1-208ENST00000485618 FAM228BP0C875 321 aa8.59□□□□□ -1.03
SF3A1-208ENST00000485618 RRM1P23921 792 aa8.59□□□□□ -1.03
SF3A1-208ENST00000485618 PTPN9P43378 593 aa8.59□□□□□ -1.03
SF3A1-208ENST00000485618 PGFP49763 221 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms