RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 SMYD5Q6GMV2 418 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 SPATA21Q7Z572 469 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 SCAMP5Q8TAC9 235 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 MAGEB18Q96M61 343 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 CEP41Q9BYV8 373 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 CD248Q9HCU0 757 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 MLXIPLQ9NP71 852 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 ABCF3Q9NUQ8 709 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 FARP1Q9Y4F1 1045 aaPredicted RBP14.98□□□□□ -0.01
CHD3-211ENST00000481999 PTCH2Q9Y6C5 1203 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 FAM72CH0Y354 149 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 HSPA8P11142 646 aaKnown RBP14.98□□□□□ -0.01
CHD3-211ENST00000481999 PTPN9P43378 593 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 ROR1Q01973 937 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 PDIA2Q13087 525 aaKnown RBP14.98□□□□□ -0.01
CHD3-211ENST00000481999 EFTUD2Q15029 972 aaKnown RBP eCLIP14.98□□□□□ -0.01
CHD3-211ENST00000481999 FAM133BQ5BKY9 247 aaKnown RBP14.98□□□□□ -0.01
CHD3-211ENST00000481999 FAM72AQ5TYM5 149 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 FAM72DQ6L9T8 149 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 ZNF598Q86UK7 904 aaKnown RBP14.98□□□□□ -0.01
CHD3-211ENST00000481999 FAM72BQ86X60 149 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 ZDHHC17Q8IUH5 632 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 GDAP1Q8TB36 358 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 SLC7A14Q8TBB6 771 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 CCDC110Q8TBZ0 833 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 TGS1Q96RS0 853 aaKnown RBP14.98□□□□□ -0.01
CHD3-211ENST00000481999 NRDE2Q9H7Z3 1164 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 USP29Q9HBJ7 922 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 ARL2BPQ9Y2Y0 163 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 SNX10Q9Y5X0 201 aa14.98□□□□□ -0.01
CHD3-211ENST00000481999 EXOC1LA0A1B0GW35 172 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 RASA4BC9J798 803 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 RASA4O43374 803 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 CREB3O43889 395 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 ELF3P78545 371 aaPredicted RBP14.97□□□□□ -0.01
CHD3-211ENST00000481999 MORF4L2Q15014 288 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 CCDC91Q7Z6B0 441 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 CSPG4P5Q96PW8 444 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 TRIM56Q9BRZ2 755 aaKnown RBP14.97□□□□□ -0.01
CHD3-211ENST00000481999 UBN1Q9NPG3 1134 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 NUDT5Q9UKK9 219 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 TSC2P49815 1807 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 HHLA1C9JL84 531 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 APOL1O14791 398 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 MDM4O15151 490 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 NCAM1P13591 858 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 SSTR1P30872 391 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 LHX1P48742 406 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 SLC8A3P57103 927 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 TUSC3Q13454 348 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 TCTN1Q2MV58 587 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 SLC25A52Q3SY17 297 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 SDHAF4Q5VUM1 108 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 TDRPQ86YL5 185 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 RSPH1Q8WYR4 309 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 MAML1Q92585 1016 aa14.97□□□□□ -0.01
CHD3-211ENST00000481999 NUP205Q92621 2012 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 FAM47DPA6NHR8 397 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 ACADSBP45954 432 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 IL9RQ01113 521 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 GPNMBQ14956 572 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 TMED2Q15363 201 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 DPYSL2Q16555 572 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 SLC9A4Q6AI14 798 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 IGDCC3Q8IVU1 814 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 AGGF1Q8N302 714 aaeCLIP14.96□□□□□ -0.01
CHD3-211ENST00000481999 NAT8LQ8N9F0 302 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 TTC13Q8NBP0 860 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 GRAMD1AQ96CP6 724 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 LGMNQ99538 433 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 HMX1Q9NP08 348 aaPredicted RBP14.96□□□□□ -0.01
CHD3-211ENST00000481999 C5orf42Q9H799 3197 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 UNC80Q8N2C7 3258 aa14.96□□□□□ -0.01
CHD3-211ENST00000481999 C9IYK1 514 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 FKTNO75072 461 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 UBOX5O94941 541 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 LBX1P52954 281 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 MTFR1Q15390 333 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 GALNTL6Q49A17 601 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 EFHC1Q5JVL4 640 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 BHLHA9Q7RTU4 235 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 MAP7D3Q8IWC1 876 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 TSPAN18Q96SJ8 248 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 PPCSQ9HAB8 311 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 SHOC2Q9UQ13 582 aa14.96□□□□□ -0.02
CHD3-211ENST00000481999 CAPN9O14815 690 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 NBNO60934 754 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 ODC1P11926 461 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 GCAP28676 217 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 GRK4P32298 578 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 DAOAP59103 153 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 GRIK3Q13003 919 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 PDK2Q15119 407 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 ZKSCAN8Q15776 578 aaPredicted RBP14.95□□□□□ -0.02
CHD3-211ENST00000481999 HIF1AQ16665 826 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 NCBP2-AS2Q69YL0 99 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 OVOS1Q6IE37 1185 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 TRABD2AQ86V40 505 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 TMEM86AQ8N2M4 240 aa14.95□□□□□ -0.02
CHD3-211ENST00000481999 TEKT4Q8WW24 435 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms