RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 HCN2Q9UL51 889 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 TRIM24O15164 1050 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 FGFR1OPO95684 399 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 MFAP3P55082 362 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 MORC3Q14149 939 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 CNGA2Q16280 664 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 TCEAL6Q6IPX3 200 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 MSANTD2Q6P1R3 559 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 SLC23A3Q6PIS1 610 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 TMEM270Q6UE05 265 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 TOGARAM2Q6ZUX3 1019 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 BHLHA9Q7RTU4 235 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 RLN3Q8WXF3 142 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 TCEAL3Q969E4 200 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 HSFY1Q96LI6 401 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 FAM81BQ96LP2 452 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 SMOC1Q9H4F8 434 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 CALCOCO1Q9P1Z2 691 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 MBD1Q9UIS9 605 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 CIZ1Q9ULV3 898 aaPredicted RBP12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 INVSQ9Y283 1065 aa12.69□□□□□ -0.38
SQSTM1-207ENST00000481335 IGHV1OR15-9A0A0B4J2B8 117 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 SLC12A8A0AV02 714 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 SART1O43290 800 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 TIMM44O43615 452 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 FBXO21O94952 628 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 CD44P16070 742 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 NDUFV2P19404 249 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 CSRP1P21291 193 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 DAOAP59103 153 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 SHC2P98077 582 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 RPL6Q02878 288 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 PAK1Q13153 545 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 MPPE1Q53F39 396 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 TRIM61Q5EBN2 209 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 MPP7Q5T2T1 576 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 BSPRYQ5W0U4 402 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 DENND1CQ8IV53 801 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 FMNL3Q8IVF7 1028 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 TRIM59Q8IWR1 403 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 PPM1KQ8N3J5 372 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 LMO3Q8TAP4 145 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 SLC35F5Q8WV83 523 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 NELFBQ8WX92 580 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 PIGKQ92643 395 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 ERCC4Q92889 916 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 PIWIL1Q96J94 861 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 TRIM62Q9BVG3 475 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 ZDHHC4Q9NPG8 344 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 PLK2Q9NYY3 685 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 THAP10Q9P2Z0 257 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 PILRBQ9UKJ0 227 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 NFE2L3Q9Y4A8 694 aa12.68□□□□□ -0.38
SQSTM1-207ENST00000481335 MAP1BP46821 2468 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 PCDH15Q96QU1 1955 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 PCNX2A6NKB5 2137 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 MUC22E2RYF6 1773 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 PPP1R3GB7ZBB8 358 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 TULP2O00295 520 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 IRAK2O43187 625 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 KCNK5O95279 499 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 PMLP29590 882 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 PTGER3P43115 390 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 RING1Q06587 406 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 NNTQ13423 1086 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 DUOXA1Q1HG43 343 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 ADGRF1Q5T601 910 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 NUGGCQ68CJ6 796 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 KLHL10Q6JEL2 608 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 ENOSF1Q7L5Y1 443 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 UNC45BQ8IWX7 931 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 TMEFF1Q8IYR6 380 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 WFIKKN2Q8TEU8 576 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 DDI1Q8WTU0 396 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 GOLGA1Q92805 767 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 FOXJ1Q92949 421 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 AZIN2Q96A70 460 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 MRGPRX1Q96LB2 322 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 ACOX2Q99424 681 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 FBRSQ9HAH7 460 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 SUSD2Q9UGT4 822 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 ANGPTL2Q9UKU9 493 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 CNTN6Q9UQ52 1028 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 PCDHB4Q9Y5E5 795 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 STON1Q9Y6Q2 735 aa12.67□□□□□ -0.38
SQSTM1-207ENST00000481335 YJEFN3A6XGL0 299 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 C4orf47A7E2U8 309 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 UPK3BL1B0FP48 263 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 UPK3BL2E5RIL1 263 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 E7ENQ6 273 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 M0QYV0 167 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 CDX4O14627 284 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 IGLV3-27P01718 113 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 AFPP02771 609 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 HMBSP08397 361 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 SERPINF2P08697 491 aa12.66□□□□□ -0.38
SQSTM1-207ENST00000481335 C7P10643 843 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms