RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 ZNF33AQ06730 810 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 PDE4CQ08493 712 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 EFEMP1Q12805 493 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SEMA3BQ13214 749 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CUL2Q13617 745 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GEN1Q17RS7 908 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 DUOXA1Q1HG43 343 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 TMEM215Q68D42 235 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SDE2Q6IQ49 451 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ARMCX6Q7L4S7 300 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 ARHGAP18Q8N392 663 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CEP76Q8TAP6 659 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 KCTD13Q8WZ19 329 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 NDRG1Q92597 394 aaKnown RBP12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 CD93Q9NPY3 652 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 MARCH2Q9P0N8 246 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 SLC6A14Q9UN76 642 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 RAD54BQ9Y620 910 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 STON1Q9Y6Q2 735 aa12.84□□□□□ -0.35
MSH5-SAPCD1-205ENST00000476085 GJB3O75712 270 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 IL12RB1P42701 662 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TKTL1P51854 596 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 YWHAGP61981 247 aaKnown RBP eCLIP12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 LRRC63Q05C16 580 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FUT11Q495W5 492 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DENND1CQ8IV53 801 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ELOA2Q8IYF1 753 aaPredicted RBP12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 LMO3Q8TAP4 145 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 BHMTQ93088 406 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PLD4Q96BZ4 506 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TIGD1Q96MW7 591 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SLC2A11Q9BYW1 496 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ULBP1Q9BZM6 244 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 MKRN2Q9H000 416 aaKnown RBP12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SLC6A17Q9H1V8 727 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ITM2CQ9NQX7 267 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 RMND1Q9NWS8 449 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ELOVL2Q9NXB9 296 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 USP36Q9P275 1121 aaKnown RBP12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 RASAL2Q9UJF2 1139 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TSPAN16Q9UKR8 245 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 KIAA1257Q9ULG3 409 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CYP8B1Q9UNU6 501 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 NFE2L3Q9Y4A8 694 aa12.83□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TRIM49BA6NDI0 452 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 KCNJ18B7U540 433 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 O00370 1275 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 IGLV3-19P01714 112 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 VDRP11473 427 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 KCNA4P22459 653 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 BCAT1P54687 386 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ZNF252P-AS1Q0IIN9 211 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 BST2Q10589 180 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SGO2Q562F6 1265 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FOXR2Q6PJQ5 311 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 LCLAT1Q6UWP7 414 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 KIAA0907Q7Z7F0 614 aaPredicted RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DEFB119Q8N690 84 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SLC35F5Q8WV83 523 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DNASE2BQ8WZ79 361 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CCDC34Q96HJ3 373 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ZSWIM1Q9BR11 485 aa12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 GTPBP4Q9BZE4 634 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DNAAF2Q9NVR5 837 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 WSB2Q9NYS7 404 aaPredicted RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ARMCX3Q9UH62 379 aaPredicted RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CIZ1Q9ULV3 898 aaPredicted RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 HBS1LQ9Y450 684 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ATXN2Q99700 1313 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 MUC22E2RYF6 1773 aaPredicted RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 SLC12A8A0AV02 714 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 YJEFN3A6XGL0 299 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 E7ENQ6 273 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 RNF225M0QZC1 329 aaPredicted RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ARHGAP33O14559 1287 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TIMM44O43615 452 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TOP3BO95985 862 aaKnown RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 PROS1P07225 676 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 HMBSP08397 361 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CD59P13987 128 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 CD44P16070 742 aaKnown RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 BMP6P22004 513 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 HOXD9P28356 352 aaPredicted RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 RPL34P49207 117 aaKnown RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FMO5P49326 533 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 COPAP53621 1224 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ZNF234Q14588 700 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 EIF4HQ15056 248 aaKnown RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 GOLGA7BQ2TAP0 167 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 UAP1L1Q3KQV9 507 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 BSPRYQ5W0U4 402 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 RABEPKQ7Z6M1 372 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FMNL3Q8IVF7 1028 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TRIML1Q8N9V2 468 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 KDF1Q8NAX2 398 aaPredicted RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 DEFB124Q8NES8 71 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 C1orf216Q8TAB5 229 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 TFAP2BQ92481 460 aa12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 ERCC4Q92889 916 aaPredicted RBP12.81□□□□□ -0.36
MSH5-SAPCD1-205ENST00000476085 FSCN3Q9NQT6 498 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms