RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 PYGMP11217 842 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 HMGA1P17096 107 aaKnown RBP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 KDELR1P24390 212 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 DDX6P26196 483 aaKnown RBP eCLIP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 AVPR1AP37288 418 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 SLC11A2P49281 568 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 PEX5P50542 639 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 TPI1P60174 286 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 PPP2R5DQ14738 602 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 TRIP4Q15650 581 aaPredicted RBP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 DUSP6Q16828 381 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 ZNF697Q5TEC3 545 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 BHLHA9Q7RTU4 235 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 ADAT2Q7Z6V5 191 aaKnown RBP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 DDX42Q86XP3 938 aaKnown RBP eCLIP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 CPNE8Q86YQ8 564 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 TTC13Q8NBP0 860 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 TTC16Q8NEE8 873 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 SMG7Q92540 1137 aaKnown RBP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 NT5C3BQ969T7 300 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 PLD4Q96BZ4 506 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 ACSF2Q96CM8 615 aaPredicted RBP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 GAS2L1Q99501 681 aaPredicted RBP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 DDX50Q9BQ39 737 aaKnown RBP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 ZNF670Q9BS34 389 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 OSBPL8Q9BZF1 889 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 CCSER2Q9H7U1 834 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 L2HGDHQ9H9P8 463 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 GPATCH2LQ9NWQ4 482 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 RCOR3Q9P2K3 495 aaPredicted RBP10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 FZD10Q9ULW2 581 aa10.66□□□□□ -0.7
PRPF38A-202ENST00000474048 CCDC195A0A1B0GUA6 201 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 APOL1O14791 398 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 FYNP06241 537 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 ZDHHC11BP0C7U3 371 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 PFKLP17858 780 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 TFE3P19532 575 aaPredicted RBP10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 IL1R2P27930 398 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 HTR7P34969 479 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 ADRA1BP35368 520 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 CXCR3P49682 368 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 ATXN1P54253 815 aaKnown RBP10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 DYNLT1P63172 113 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 RING1Q06587 406 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 DPYSL2Q16555 572 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 LRIT3Q3SXY7 679 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 ZC3H12AQ5D1E8 599 aaKnown RBP10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 TEX35Q5T0J7 233 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 SNX30Q5VWJ9 437 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 C8orf74Q6P047 294 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 KLHDC10Q6PID8 442 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 BZW1Q7L1Q6 419 aaKnown RBP10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 ADGRD2Q7Z7M1 963 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 VSIG1Q86XK7 387 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 SLC13A5Q86YT5 568 aaPredicted RBP10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 CCDC117Q8IWD4 279 aaPredicted RBP10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 RASGEF1CQ8N431 466 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 ZNF276Q8N554 614 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 CCDC185Q8N715 623 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 CCDC26Q8TAB7 109 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 SLC22A17Q8WUG5 538 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 UBXN4Q92575 508 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 HAUS1Q96CS2 278 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 MS4A14Q96JA4 679 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 BTN2A3PQ96KV6 586 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 CCDC114Q96M63 670 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 PEBP4Q96S96 227 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 HEMGNQ9BXL5 484 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 PRKD2Q9BZL6 878 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 DCLK3Q9C098 648 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 SIK2Q9H0K1 926 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 CATSPERBQ9H7T0 1116 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 PRDM16Q9HAZ2 1276 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 LMCD1Q9NZU5 365 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 FEZ2Q9UHY8 353 aaPredicted RBP10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 TTC7AQ9ULT0 858 aaPredicted RBP10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 SH3BP1Q9Y3L3 701 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 CEP290O15078 2479 aa10.65□□□□□ -0.7
PRPF38A-202ENST00000474048 A0A1W2PRU2 124 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 EFCAB8A8MWE9 144 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 ZNF487B1APH4 448 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 MCF2LO15068 1137 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 FANCGO15287 622 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 COCHO43405 550 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 RFPL2O75678 378 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 RHOP08100 348 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 IRF1P10914 325 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 TCF4P15884 667 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 HDCP19113 662 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 IGFBP4P22692 258 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 PTPN7P35236 360 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 SERPINB6P35237 376 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 VASPP50552 380 aaPredicted RBP10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 PITX1P78337 314 aaPredicted RBP10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 CYP4F8P98187 520 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 LMNB2Q03252 620 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 C2orf54Q08AI8 447 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 SCAPQ12770 1279 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 CAMK1Q14012 370 aa10.64□□□□□ -0.71
PRPF38A-202ENST00000474048 ATP13A4Q4VNC1 1196 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms