RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TARSP26639 723 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PRKAA2P54646 552 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SNAP25P60880 206 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 DLG4P78352 724 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF33AQ06730 810 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 LIN9Q5TKA1 542 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 POTEAQ6S8J7 498 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 KDM1BQ8NB78 822 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 CATSPER1Q8NEC5 780 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 REPS2Q8NFH8 660 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ACTL9Q8TC94 416 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 RTKNQ9BST9 563 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 NDE1Q9NXR1 346 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 EXOC1LA0A1B0GW35 172 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ARHGEF35A5YM69 484 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TXNDC9O14530 226 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 NDUFB10O96000 172 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PROCP04070 461 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SPATA31D3P0C874 917 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ATXN8OSP0DMR3 200 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 LRRC14Q15048 493 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 EPGNQ6UW88 154 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 IZUMO2Q6UXV1 221 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 SPATA31D4Q6ZUB0 917 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 GALNT7Q86SF2 657 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PTRH1Q86Y79 214 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 YAF2Q8IY57 180 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 KIAA0319LQ8IZA0 1049 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 LINC01465Q8N7H1 131 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 OR13F1Q8NGS4 319 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 HHIPQ96QV1 700 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 GOLGA8HP0CJ92 632 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 PIK3CAP42336 1068 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TRAP1Q12931 704 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 EFTUD2Q15029 972 aaKnown RBP eCLIP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 MYLK3Q32MK0 819 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 INTS6LQ5JSJ4 861 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 NXNQ6DKJ4 435 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 HS6ST3Q8IZP7 471 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 RFWD2Q8NHY2 731 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF516Q92618 1163 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 GPR78Q96P69 363 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 ACCSQ96QU6 501 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TMEM120AQ9BXJ8 343 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 MAGEE1Q9HCI5 957 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 XAB2Q9HCS7 855 aaKnown RBP5.53□□□□□ -1.52
SYNE1-220ENST00000471834 DNPEPQ9ULA0 475 aa5.53□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM24O15164 1050 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 PTPN9P43378 593 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CCDC157Q569K6 752 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 PODNQ7Z5L7 613 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 TRUB1Q8WWH5 349 aaKnown RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 KCNK16Q96T55 309 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 TMEM134Q9H6X4 195 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 FAM198AQ9UFP1 575 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 TUBGCP4Q9UGJ1 667 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L15C9J2P7 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L13C9JLJ4 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L11C9JVI0 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L18D6R9N7 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L22D6RA61 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L17D6RBQ6 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L19D6RCP7 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L20D6RJB6 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 RGS20O76081 388 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CCNE2O96020 404 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 NTRK1P04629 796 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ABCB4P21439 1286 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SCNN1DP51172 638 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ITKQ08881 620 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L24Q0WX57 530 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CDC20Q12834 499 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CCNJQ5T5M9 372 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ANKRD22Q5VYY1 191 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 BSPRYQ5W0U4 402 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 USP17L6PQ6QN14 398 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 BRSK2Q8IWQ3 736 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CDAN1Q8IWY9 1227 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 PLD5Q8N7P1 536 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ZBTB8BQ8NAP8 495 aaPredicted RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SNRNP27Q8WVK2 155 aaKnown RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 GPRASP2Q96D09 838 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 GCNAQ96QF7 691 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 FBXO6Q9NRD1 293 aaPredicted RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 THG1LQ9NWX6 298 aaKnown RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 TCAF1Q9Y4C2 921 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 RAD54BQ9Y620 910 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 CCDC88AQ3V6T2 1871 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 TAF1LQ8IZX4 1826 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 PTPRJQ12913 1337 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SYNJ2BP-COX16A0A087WUM0 186 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SMIM24O75264 130 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 TNFAIP8O95379 198 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 RPSAP08865 295 aaKnown RBP5.52□□□□□ -1.53
SYNE1-220ENST00000471834 FAM200BP0CF97 657 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SETSIPP0DME0 302 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SFNP31947 248 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ICAM3P32942 547 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 SLC26A3P40879 764 aa5.52□□□□□ -1.53
SYNE1-220ENST00000471834 ATP4BP51164 291 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms