RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 SGSHP51688 502 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 RING1Q06587 406 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 USP4Q13107 963 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ZNF77Q15935 545 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 KCNT1Q5JUK3 1230 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 FAM78AQ5JUQ0 283 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ZNF569Q5MCW4 686 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 HECTD3Q5T447 861 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 BTBD8Q5XKL5 378 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 FAM131BQ86XD5 332 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 MICALL1Q8N3F8 863 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 MAB21L3Q8N8X9 362 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ST13P5Q8NFI4 369 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-207ENST00000471342 COG1Q8WTW3 980 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 NTAN1Q96AB6 310 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ACSF2Q96CM8 615 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ASIC4Q96FT7 647 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 LMLNQ96KR4 655 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ASB16Q96NS5 453 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 TSGA10Q9BZW7 698 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ATXN3LQ9H3M9 355 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 SYNCQ9H7C4 482 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 UBE2ZQ9H832 354 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-207ENST00000471342 RRAGDQ9NQL2 400 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ASAH2Q9NR71 780 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 GPATCH2LQ9NWQ4 482 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 CLDND1Q9NY35 253 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 TRPM5Q9NZQ8 1165 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 UXTQ9UBK9 157 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ARHGAP26Q9UNA1 814 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 TLR6Q9Y2C9 796 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 NR2E1Q9Y466 385 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 USP15Q9Y4E8 981 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-207ENST00000471342 DENND4AQ7Z401 1863 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 IGLV3-10A0A075B6K4 115 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 GOLGA6L7A0A1B0GV03 622 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 TCRBV7S2A1N4TA0A589 114 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 OTOL1A6NHN0 477 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 DRGXA6NNA5 263 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 ANHXE9PGG2 379 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 H3BQ06 376 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 ARNTLO00327 626 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 PDE2AO00408 941 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 ENC1O14682 589 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 MBTPS2O43462 519 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 PFKLP17858 780 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 CDC25CP30307 473 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 SDC4P31431 198 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 RDXP35241 583 aaKnown RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 GGCXP38435 758 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 SLC1A1P43005 524 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 NOP2P46087 812 aaKnown RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 SULT1E1P49888 294 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 MLLT6P55198 1093 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 NRG1Q02297 640 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 ITIH3Q06033 890 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 EFEMP1Q12805 493 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 KLF1Q13351 362 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 PPP2R5DQ14738 602 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 VEPH1Q14D04 833 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 DPYSL2Q16555 572 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 GPR158Q5T848 1215 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 DCUN1D2Q6PH85 259 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 HTR3DQ70Z44 454 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 ARID3BQ8IVW6 561 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 CMTM8Q8IZV2 173 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 ARHGAP18Q8N392 663 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 RASGEF1CQ8N431 466 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 PQLC3Q8N755 202 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 LEMD2Q8NC56 503 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 OR52K2Q8NGK3 314 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 ING5Q8WYH8 240 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 PRICKLE1Q96MT3 831 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 SLITRK1Q96PX8 696 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 KCTD15Q96SI1 283 aaPredicted RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 OSBPL2Q9H1P3 480 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 NOL6Q9H6R4 1146 aaKnown RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 PCDH18Q9HCL0 1135 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 ETNK2Q9NVF9 386 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 DDIT4Q9NX09 232 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 RRN3Q9NYV6 651 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 MARCH2Q9P0N8 246 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 PCSK1NQ9UHG2 260 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 AGO1Q9UL18 857 aaKnown RBP10.28□□□□□ -0.76
SF3A1-207ENST00000471342 USP18Q9UMW8 372 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 MFHAS1Q9Y4C4 1052 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 HS3ST4Q9Y661 456 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 DENND4CQ5VZ89 1909 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 CLUHO75153 1309 aa10.28□□□□□ -0.76
SF3A1-207ENST00000471342 DOCK8Q8NF50 2099 aa10.27□□□□□ -0.76
SF3A1-207ENST00000471342 SLC12A8A0AV02 714 aa10.27□□□□□ -0.77
SF3A1-207ENST00000471342 TMEM110-MUSTN1A8MSY1 372 aa10.27□□□□□ -0.77
SF3A1-207ENST00000471342 LEFTY2O00292 366 aa10.27□□□□□ -0.77
SF3A1-207ENST00000471342 ZNF185O15231 689 aa10.27□□□□□ -0.77
SF3A1-207ENST00000471342 XYLBO75191 536 aa10.27□□□□□ -0.77
SF3A1-207ENST00000471342 HDCP19113 662 aa10.27□□□□□ -0.77
SF3A1-207ENST00000471342 ATP5C1P36542 298 aaKnown RBP10.27□□□□□ -0.77
SF3A1-207ENST00000471342 VIPR2P41587 438 aa10.27□□□□□ -0.77
SF3A1-207ENST00000471342 CDKN2BP42772 138 aa10.27□□□□□ -0.77
SF3A1-207ENST00000471342 SNX16P57768 344 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms