RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745	CWC15	Q9P013	229 aa	Known RBP	9.09	□□□□□ -0.95
RIF1-208	ENST00000457745	AMACR	Q9UHK6	382 aa		9.09	□□□□□ -0.95
RIF1-208	ENST00000457745	AP4E1	Q9UPM8	1137 aa		9.09	□□□□□ -0.95
RIF1-208	ENST00000457745	VPS9D1	Q9Y2B5	631 aa		9.09	□□□□□ -0.95
RIF1-208	ENST00000457745	NEU2	Q9Y3R4	380 aa		9.09	□□□□□ -0.95
RIF1-208	ENST00000457745	INSL5	Q9Y5Q6	135 aa		9.09	□□□□□ -0.95
RIF1-208	ENST00000457745	MTCL1	Q9Y4B5	1905 aa	Known RBP	9.09	□□□□□ -0.95
RIF1-208	ENST00000457745	CHD9	Q3L8U1	2897 aa		9.09	□□□□□ -0.95
RIF1-208	ENST00000457745	NYNRIN	Q9P2P1	1898 aa	Known RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	SCAMP3	O14828	347 aa	Known RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	TP73	O15350	636 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	SART1	O43290	800 aa	Known RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	PHF2	O75151	1096 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	ZRANB2	O95218	330 aa	Known RBP eCLIP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	CXCL14	O95715	111 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	ZSCAN5DP	P0CG00	497 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	ETS1	P14921	441 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	ATF2	P15336	505 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	H2AFX	P16104	143 aa	Predicted RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	EPCAM	P16422	314 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	GOT1	P17174	413 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	GJA1	P17302	382 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	AMPD1	P23109	780 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	YWHAQ	P27348	245 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	PTPN7	P35236	360 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	RDX	P35241	583 aa	Known RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	PAFAH1B1	P43034	410 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	CXCR3	P49682	368 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	GDF10	P55107	478 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	ZXDB	P98169	803 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	DEUP1	Q05D60	604 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	PPP2R5E	Q16537	467 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	MSANTD2	Q6P1R3	559 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	DENND5B	Q6ZUT9	1274 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	BBS12	Q6ZW61	710 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	TMC8	Q8IU68	726 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	RCOR2	Q8IZ40	523 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	C12orf50	Q8NA57	414 aa	Predicted RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	VN1R2	Q8NFZ6	395 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	GDPD5	Q8WTR4	605 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	TEKT4	Q8WW24	435 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	FBXO32	Q969P5	355 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	LBHD1	Q9BQE6	289 aa	Predicted RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	PBX4	Q9BYU1	374 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	DNAI2	Q9GZS0	605 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	SMOC2	Q9H3U7	446 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	DHX35	Q9H5Z1	703 aa	Known RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	FAM204A	Q9H8W3	233 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	ZNF446	Q9NWS9	450 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	HCFC1R1	Q9NWW0	138 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	DDIT4	Q9NX09	232 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	CDH22	Q9UJ99	828 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	FBXW11	Q9UKB1	542 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	MAGED2	Q9UNF1	606 aa	Predicted RBP	9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	PCDHB12	Q9Y5F1	795 aa		9.08	□□□□□ -0.96
RIF1-208	ENST00000457745	C2orf16	Q68DN1	1984 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	GOLGA6L7	A0A1B0GV03	622 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	C2orf78	A6NCI8	922 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	C5orf67	F2Z3F1	127 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	PER2	O15055	1255 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	LIAS	O43766	372 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	MFSD11	O43934	449 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	PRPSAP2	O60256	369 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	CST8	O60676	142 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	CLASP2	O75122	1294 aa	Known RBP	9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	RFPL2	O75678	378 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	RNF8	O76064	485 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	HEXIM1	O94992	359 aa	Known RBP	9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	FAM153B	P0C7A2	387 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	RARG	P13631	454 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	CA8	P35219	290 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	ADRA1B	P35368	520 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	PPM1A	P35813	382 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	COIL	P38432	576 aa	Predicted RBP	9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	CCR2	P41597	374 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	KCNQ1	P51787	676 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	SLC8A3	P57103	927 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	NTHL1	P78549	312 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	OTUD4	Q01804	1114 aa	Known RBP	9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	GBE1	Q04446	702 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	EFEMP1	Q12805	493 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	DPYS	Q14117	519 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	ACAP1	Q15027	740 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	TRIP13	Q15645	432 aa	Predicted RBP	9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	DPYSL2	Q16555	572 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	FAM153C	Q494X1	144 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	ANKRD20A8P	Q5CZ79	823 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	PPP6R3	Q5H9R7	873 aa	Predicted RBP	9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	STXBP5	Q5T5C0	1151 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	ERMARD	Q5T6L9	678 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	PIK3R6	Q5UE93	754 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	BTBD8	Q5XKL5	378 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	NCBP2-AS2	Q69YL0	99 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	NADSYN1	Q6IA69	706 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	C1orf228	Q6PIY5	440 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	TMC7	Q7Z402	723 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	RFX6	Q8HWS3	928 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	TCEAL8	Q8IYN2	117 aa		9.07	□□□□□ -0.96
RIF1-208	ENST00000457745	ZNF683	Q8IZ20	524 aa		9.07	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms