RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PMLP29590 882 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 CORO1AP31146 461 aaKnown RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 PRCPP42785 496 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 NOVA1P51513 510 aaKnown RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 TKTL1P51854 596 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 ZNF33AQ06730 810 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 BST2Q10589 180 aaKnown RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 EFEMP1Q12805 493 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 SLC14A1Q13336 389 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 CUL2Q13617 745 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 ST3GAL2Q16842 350 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 MPPE1Q53F39 396 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 DCAF17Q5H9S7 520 aaPredicted RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 SMYD5Q6GMV2 418 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 PSAPL1Q6NUJ1 521 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 FOXR2Q6PJQ5 311 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 GPRIN1Q7Z2K8 1008 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 SCD5Q86SK9 330 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 PIGZQ86VD9 579 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 UNC45BQ8IWX7 931 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 FMR1NBQ8N0W7 255 aaPredicted RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 SIX6OS1Q8N1H7 587 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 SCML4Q8N228 414 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 SLC4A11Q8NBS3 891 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 CADM4Q8NFZ8 388 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 SPATA20Q8TB22 786 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 DDI1Q8WTU0 396 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 RLN3Q8WXF3 142 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 KCTD13Q8WZ19 329 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 TWNKQ96RR1 684 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 DDX50Q9BQ39 737 aaKnown RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 TRIM62Q9BVG3 475 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 PCED1AQ9H1Q7 454 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 SMOC1Q9H4F8 434 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 PRDM16Q9HAZ2 1276 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 NMUR1Q9HB89 426 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 CNGB3Q9NQW8 809 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 RXFP3Q9NSD7 469 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 ABCC13Q9NSE7 274 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 OSER1Q9NX31 292 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 RASAL2Q9UJF2 1139 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 PLA2G4CQ9UP65 541 aa7.41□□□□□ -1.22
VPS41-208ENST00000448833 HBS1LQ9Y450 684 aaKnown RBP7.41□□□□□ -1.22
VPS41-208ENST00000448833 CKAP5Q14008 2032 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ASCC3Q8N3C0 2202 aaKnown RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 TPRP12270 2363 aaKnown RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 ACACBO00763 2458 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 SLC12A8A0AV02 714 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 H0Y626 953 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 CDX4O14627 284 aaPredicted RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 IRAK2O43187 625 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 SART1O43290 800 aaKnown RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 OPHN1O60890 802 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 TRIM16O95361 564 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 GNA14O95837 355 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 CFIP05156 583 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ACADMP11310 421 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 CD19P15391 556 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ENGP17813 658 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 SLC11A2P49281 568 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 PGFP49763 221 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 MESP2Q0VG99 397 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 SFSWAPQ12872 951 aaKnown RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 PNOCQ13519 176 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 UAP1L1Q3KQV9 507 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 MPP7Q5T2T1 576 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ADGRF1Q5T601 910 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 SH3PXD2AQ5TCZ1 1133 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 EGFLAMQ63HQ2 1017 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 NUGGCQ68CJ6 796 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ANKRD40Q6AI12 368 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 TCEAL6Q6IPX3 200 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ANKS1BQ7Z6G8 1248 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 DENND1CQ8IV53 801 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 CCDC117Q8IWD4 279 aaPredicted RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 ZC3H3Q8IXZ2 948 aaKnown RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 RGL4Q8IZJ4 473 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 WFIKKN2Q8TEU8 576 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 IRGQQ8WZA9 623 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 PRCCQ92733 491 aaPredicted RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 SEMA4DQ92854 862 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 TATDN2Q93075 761 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 TCEAL3Q969E4 200 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ELMO3Q96BJ8 720 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ZNF419Q96HQ0 510 aaPredicted RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 FAM81BQ96LP2 452 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 NT5C1BQ96P26 610 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 NUP58Q9BVL2 599 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 GOLPH3LQ9H4A5 285 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 FBRSQ9HAH7 460 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ITM2CQ9NQX7 267 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 ELOVL2Q9NXB9 296 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 CALCOCO1Q9P1Z2 691 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 THAP10Q9P2Z0 257 aaPredicted RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 MBD1Q9UIS9 605 aaPredicted RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 NUDT5Q9UKK9 219 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 AGO1Q9UL18 857 aaKnown RBP7.4□□□□□ -1.22
VPS41-208ENST00000448833 STON1Q9Y6Q2 735 aa7.4□□□□□ -1.22
VPS41-208ENST00000448833 IGHV1OR15-9A0A0B4J2B8 117 aa7.39□□□□□ -1.23
VPS41-208ENST00000448833 TYW5A2RUC4 315 aaKnown RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms