RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TMEM110-MUSTN1A8MSY1 372 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 LEFTY2O00292 366 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 BUB1O43683 1085 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 PRAMEF12O95522 483 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 HMBSP08397 361 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 SLC2A3P11169 496 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 TCF3P15923 654 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 CXCR3P49682 368 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 EIF4EBP2Q13542 120 aaPredicted RBP16.42■□□□□ 0.22
USP40-206ENST00000443711 SH3PXD2AQ5TCZ1 1133 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 MTSS1LQ765P7 747 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 UNC45BQ8IWX7 931 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 SH3RF2Q8TEC5 729 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 SLC39A13Q96H72 371 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 ADAM33Q9BZ11 813 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 DCLK3Q9C098 648 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 WDCPQ9H6R7 721 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 ZFP14Q9HCL3 533 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 PIGVQ9NUD9 493 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 OBP2AQ9NY56 170 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 CFAP97Q9P2B7 532 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 TRIM10Q9UDY6 481 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 SLC12A6Q9UHW9 1150 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 CCL26Q9Y258 94 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 SH3BP1Q9Y3L3 701 aa16.42■□□□□ 0.22
USP40-206ENST00000443711 STC2O76061 302 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 IGLV3-27P01718 113 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 APOEP02649 317 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 IRF1P10914 325 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 CCR1P32246 355 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 MAN1A1P33908 653 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 VIPR2P41587 438 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 HARS2P49590 506 aaKnown RBP16.41■□□□□ 0.22
USP40-206ENST00000443711 KCNQ1P51787 676 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 HDAC4P56524 1084 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 PPP2R5DQ14738 602 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 ZC3H12AQ5D1E8 599 aaKnown RBP16.41■□□□□ 0.22
USP40-206ENST00000443711 BRMS1LQ5PSV4 323 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 NUGGCQ68CJ6 796 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 CC2D1AQ6P1N0 951 aaPredicted RBP16.41■□□□□ 0.22
USP40-206ENST00000443711 ATP6V0D2Q8N8Y2 350 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 TPCN2Q8NHX9 752 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 ADAMTS19Q8TE59 1207 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 RPGRIP1Q96KN7 1286 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 FCRL2Q96LA5 508 aaPredicted RBP16.41■□□□□ 0.22
USP40-206ENST00000443711 CALCOCO1Q9P1Z2 691 aa16.41■□□□□ 0.22
USP40-206ENST00000443711 LSM7Q9UK45 103 aaKnown RBP16.41■□□□□ 0.22
USP40-206ENST00000443711 E2F8A0AVK6 867 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 C2CD4DB7Z1M9 353 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 BUB1BO60566 1050 aaPredicted RBP16.4■□□□□ 0.22
USP40-206ENST00000443711 MOCS3O95396 460 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 IL9P15248 144 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 SP100P23497 879 aaPredicted RBP16.4■□□□□ 0.22
USP40-206ENST00000443711 PCK1P35558 622 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 SLC1A1P43005 524 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 ZXDBP98169 803 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 USP4Q13107 963 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 MTA1Q13330 715 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 TANGO2Q6ICL3 276 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 SCYL2Q6P3W7 929 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 HTR3DQ70Z44 454 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 REXO1L1PQ8IX06 675 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 ZDHHC14Q8IZN3 488 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 KIAA1958Q8N8K9 716 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 TTC16Q8NEE8 873 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 ATXN2LQ8WWM7 1075 aaKnown RBP16.4■□□□□ 0.22
USP40-206ENST00000443711 ELSPBP1Q96BH3 223 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 TRMT1Q9NXH9 659 aaKnown RBP16.4■□□□□ 0.22
USP40-206ENST00000443711 ZNF510Q9Y2H8 683 aa16.4■□□□□ 0.22
USP40-206ENST00000443711 GOLGA6L9A6NEM1 432 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 HEPACAM2A8MVW5 462 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 ANHXE9PGG2 379 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 PRPSAP2O60256 369 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 LRCH4O75427 683 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 ECI2O75521 394 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 FCARP24071 287 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 MIPP30301 263 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 CORO1AP31146 461 aaKnown RBP16.39■□□□□ 0.21
USP40-206ENST00000443711 SSR1P43307 286 aaKnown RBP16.39■□□□□ 0.21
USP40-206ENST00000443711 ATXN1P54253 815 aaKnown RBP16.39■□□□□ 0.21
USP40-206ENST00000443711 ZNF77Q15935 545 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 HADHQ16836 314 aaKnown RBP16.39■□□□□ 0.21
USP40-206ENST00000443711 ARL13BQ3SXY8 428 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 RAB6CQ53S08 254 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 C11orf63Q6NUN7 778 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 DAAM2Q86T65 1068 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 FAM131BQ86XD5 332 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 CCAR2Q8N163 923 aaKnown RBP16.39■□□□□ 0.21
USP40-206ENST00000443711 ARFGAP1Q8N6T3 406 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 KIAA1524Q8TCG1 905 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 BPIFB1Q8TDL5 484 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 NXPE3Q969Y0 559 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 AZIN2Q96A70 460 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 RAB6CQ9H0N0 254 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 THG1LQ9NWX6 298 aaKnown RBP16.39■□□□□ 0.21
USP40-206ENST00000443711 ARHGEF38Q9NXL2 777 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 PRKAG3Q9UGI9 489 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 ALG6Q9Y672 507 aa16.39■□□□□ 0.21
USP40-206ENST00000443711 KCNU1A8MYU2 1149 aa16.38■□□□□ 0.21
USP40-206ENST00000443711 LATS1O95835 1130 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms