RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SUMF1Q8NBK3 374 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 C1orf131Q8NDD1 294 aaKnown RBP15.84■□□□□ 0.13
LIMS3-201ENST00000437679 KCNV2Q8TDN2 545 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 IPO4Q8TEX9 1081 aaKnown RBP15.84■□□□□ 0.13
LIMS3-201ENST00000437679 DDI1Q8WTU0 396 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 SERPINB11Q96P15 392 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 HINFPQ9BQA5 517 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 BPIFA3Q9BQP9 254 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 SYNCQ9H7C4 482 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 POPDC2Q9HBU9 364 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 FAM207AQ9NSI2 230 aaPredicted RBP15.84■□□□□ 0.13
LIMS3-201ENST00000437679 SMG5Q9UPR3 1016 aaKnown RBP15.84■□□□□ 0.13
LIMS3-201ENST00000437679 NAALADL1Q9UQQ1 740 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 DAAM1Q9Y4D1 1078 aa15.84■□□□□ 0.13
LIMS3-201ENST00000437679 GVINP1Q7Z2Y8 2422 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 SMTNL1A8MU46 457 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 F8VZ95 297 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 TRIM24O15164 1050 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 KLF8O95600 359 aaPredicted RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 PENKP01210 267 aaPredicted RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 FYNP06241 537 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 CYP11B1P15538 503 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 HOXC13P31276 330 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 KIR2DL1P43626 348 aaPredicted RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 PXNP49023 591 aaPredicted RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 SLC11A2P49281 568 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 KLK7P49862 253 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 ZNF445P59923 1031 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 POLR2FP61218 127 aaKnown RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 YWHAZP63104 245 aaKnown RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 UBXN1Q04323 297 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 RING1Q06587 406 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 SIM2Q14190 667 aaPredicted RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 SYCP1Q15431 976 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 KLHL40Q2TBA0 621 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 MPPE1Q53F39 396 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 EOGTQ5NDL2 527 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 ADGRF1Q5T601 910 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 EMC10Q5UCC4 262 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 FYB2Q5VWT5 728 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 PRR23BQ6ZRT6 265 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 TRMT11Q7Z4G4 463 aaKnown RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 FAM217AQ8IXS0 508 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 ALLCQ8N6M5 410 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 TMEM35BQ8NCS4 154 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 TSTD1Q8NFU3 115 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 DQX1Q8TE96 717 aaKnown RBP15.83■□□□□ 0.12
LIMS3-201ENST00000437679 CPXM1Q96SM3 734 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 GANQ9H2C0 597 aa15.83■□□□□ 0.12
LIMS3-201ENST00000437679 ANTXRLA6NF34 631 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 LRRC10BA6NIK2 292 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 AXIN1O15169 862 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 HRO43593 1189 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 IGLV3-27P01718 113 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 GLI1P08151 1106 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 DGKEP52429 567 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 NNTQ13423 1086 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 CRY1Q16526 586 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 EFHC1Q5JVL4 640 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 TAF3Q5VWG9 929 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 OR6B2Q6IFH4 312 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 CEP68Q76N32 757 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 ZNF513Q8N8E2 541 aaPredicted RBP15.82■□□□□ 0.12
LIMS3-201ENST00000437679 IL17RCQ8NAC3 791 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 TXNDC5Q8NBS9 432 aaKnown RBP15.82■□□□□ 0.12
LIMS3-201ENST00000437679 NEK11Q8NG66 645 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 RUBCNQ92622 972 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 SPAG5Q96R06 1193 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 HSD3B7Q9H2F3 369 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 ASNSD1Q9NWL6 643 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 NCDNQ9UBB6 729 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 TJP2Q9UDY2 1190 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 STOML2Q9UJZ1 356 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 FBXO10Q9UK96 956 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 TLR6Q9Y2C9 796 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 SIK3Q9Y2K2 1263 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 STARD13Q9Y3M8 1113 aa15.82■□□□□ 0.12
LIMS3-201ENST00000437679 SGK1O00141 431 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 TSPAN3O60637 253 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 HSF2BPO75031 334 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 ALDH1A2O94788 518 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 CISD3P0C7P0 127 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 ZNF165P49910 485 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 SRSF5Q13243 272 aaKnown RBP15.81■□□□□ 0.12
LIMS3-201ENST00000437679 SYPL2Q5VXT5 272 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 SDE2Q6IQ49 451 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 TOGARAM2Q6ZUX3 1019 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 TAC4Q86UU9 113 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 ADAM32Q8TC27 787 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 AZIN2Q96A70 460 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 TMA16Q96EY4 203 aaKnown RBP15.81■□□□□ 0.12
LIMS3-201ENST00000437679 DDX50Q9BQ39 737 aaKnown RBP15.81■□□□□ 0.12
LIMS3-201ENST00000437679 SLC2A11Q9BYW1 496 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 POLMQ9NP87 494 aaPredicted RBP15.81■□□□□ 0.12
LIMS3-201ENST00000437679 ZDHHC4Q9NPG8 344 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 NLRC4Q9NPP4 1024 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 EBF1Q9UH73 591 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 SLC27A6Q9Y2P4 619 aa15.81■□□□□ 0.12
LIMS3-201ENST00000437679 SPAG17Q6Q759 2223 aa15.8■□□□□ 0.12
LIMS3-201ENST00000437679 ACSL4O60488 711 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms