RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 BEND5Q7L4P6 421 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 SLC26A9Q7LBE3 791 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 ZDHHC17Q8IUH5 632 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 C1orf210Q8IVY1 113 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 UNC45BQ8IWX7 931 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 SLC2A13Q96QE2 648 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 C11orf70Q9BRQ4 267 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 TTYH3Q9C0H2 523 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 CHRDQ9H2X0 955 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 FAM204AQ9H8W3 233 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 WDR35Q9P2L0 1181 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 KIAA1549LQ6ZVL6 1849 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 GOLGA6L7A0A1B0GV03 622 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 HOXC11O43248 304 aaPredicted RBP19.42■□□□□ 0.7
SHH-203ENST00000435425 CBFA2T2O43439 604 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 LAMTOR5O43504 91 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 DAB1O75553 588 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 MOCS2O96007 188 aaPredicted RBP19.42■□□□□ 0.7
SHH-203ENST00000435425 SKILP12757 684 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 UNGP13051 313 aaPredicted RBP19.42■□□□□ 0.7
SHH-203ENST00000435425 NSFP46459 744 aaKnown RBP19.42■□□□□ 0.7
SHH-203ENST00000435425 SEC13P55735 322 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 TCF15Q12870 199 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 GAS6Q14393 721 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 NUGGCQ68CJ6 796 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 EZH1Q92800 747 aaPredicted RBP19.42■□□□□ 0.7
SHH-203ENST00000435425 FCRL2Q96LA5 508 aaPredicted RBP19.42■□□□□ 0.7
SHH-203ENST00000435425 XPO6Q96QU8 1125 aaKnown RBP19.42■□□□□ 0.7
SHH-203ENST00000435425 EDEM3Q9BZQ6 932 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 KCNH6Q9H252 994 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 ARHGEF4Q9NR80 690 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 DNAJC17Q9NVM6 304 aaKnown RBP19.42■□□□□ 0.7
SHH-203ENST00000435425 TLR6Q9Y2C9 796 aa19.42■□□□□ 0.7
SHH-203ENST00000435425 TRIM24O15164 1050 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 RNF40O75150 1001 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 TULP3O75386 442 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 IGLV3-27P01718 113 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 CYBBP04839 570 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 APODP05090 189 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 MMP8P22894 467 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 GBP1P32455 592 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 SLC11A2P49281 568 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 PTPN5P54829 565 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 MESP2Q0VG99 397 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 NME3Q13232 169 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 ZC3H12AQ5D1E8 599 aaKnown RBP19.41■□□□□ 0.7
SHH-203ENST00000435425 FIGNQ5HY92 759 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 E4F1Q66K89 784 aaPredicted RBP19.41■□□□□ 0.7
SHH-203ENST00000435425 SFTPA1Q8IWL2 248 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 ZNF397Q8NF99 534 aaPredicted RBP19.41■□□□□ 0.7
SHH-203ENST00000435425 DDI1Q8WTU0 396 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 RNF34Q969K3 372 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 HAUS4Q9H6D7 363 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 METTL5Q9NRN9 209 aaKnown RBP19.41■□□□□ 0.7
SHH-203ENST00000435425 DDIT4Q9NX09 232 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.41■□□□□ 0.7
SHH-203ENST00000435425 AIPL1Q9NZN9 384 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 MARK1Q9P0L2 795 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 DEC1Q9P2X7 70 aa19.41■□□□□ 0.7
SHH-203ENST00000435425 ANTXRLA6NF34 631 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 TMCO5BA8MYB1 307 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 PALM2-AKAP2B1ALY0 433 aaPredicted RBP19.4■□□□□ 0.7
SHH-203ENST00000435425 M0QYT0 321 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 IRAK2O43187 625 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 ACSL4O60488 711 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 KAT7O95251 611 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 APOEP02649 317 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 NOS2P35228 1153 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 EIF2DP41214 584 aaKnown RBP19.4■□□□□ 0.7
SHH-203ENST00000435425 SULT1E1P49888 294 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 CSTF1Q05048 431 aaKnown RBP19.4■□□□□ 0.7
SHH-203ENST00000435425 RING1Q06587 406 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 KLHL30Q0D2K2 578 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 ADGRF1Q5T601 910 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 GRAMD4Q6IC98 578 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 PKN3Q6P5Z2 889 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 RFWD3Q6PCD5 774 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 TSSK4Q6SA08 328 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 ETFBKMTQ8IXQ9 262 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 SYNPOQ8N3V7 929 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 CPXM2Q8N436 756 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 P2RY11Q96G91 374 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 SLC39A13Q96H72 371 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 ADAM22Q9P0K1 906 aa19.4■□□□□ 0.7
SHH-203ENST00000435425 A0A1W2PQJ5 194 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 TBC1D3BA6NDS4 549 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 K7EQS6 105 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 GJB6O95452 261 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 MATKP42679 507 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 SATB1Q01826 763 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 CENPCQ03188 943 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 NNTQ13423 1086 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 FBXO43Q4G163 708 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 MPPE1Q53F39 396 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 C2orf27AQ580R0 203 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 FYB2Q5VWT5 728 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 RPLP0P6Q8NHW5 317 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 ATOH1Q92858 354 aaPredicted RBP19.39■□□□□ 0.69
SHH-203ENST00000435425 FAM86C1Q9NVL1 165 aa19.39■□□□□ 0.69
SHH-203ENST00000435425 XPO7Q9UIA9 1087 aaKnown RBP19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms