RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	RAD9B	Q6WBX8	426 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	LRRC8A	Q8IWT6	810 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	UNC45B	Q8IWX7	931 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	SLC44A3	Q8N4M1	653 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	RNF34	Q969K3	372 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	NT5C3B	Q969T7	300 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	PGAP3	Q96FM1	320 aa	Predicted RBP	13.7	□□□□□ -0.22
SF1-206	ENST00000413725	PDLIM2	Q96JY6	352 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	CFAP57	Q96MR6	1250 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	NECAB3	Q96P71	396 aa	Predicted RBP	13.7	□□□□□ -0.22
SF1-206	ENST00000413725	RPP25	Q9BUL9	199 aa	Known RBP	13.7	□□□□□ -0.22
SF1-206	ENST00000413725	NUP85	Q9BW27	656 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	BRD9	Q9H8M2	597 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	COX16	Q9P0S2	106 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	TBC1D14	Q9P2M4	693 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	UVRAG	Q9P2Y5	699 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	SORCS3	Q9UPU3	1222 aa		13.7	□□□□□ -0.22
SF1-206	ENST00000413725	MYO18A	Q92614	2054 aa	Known RBP	13.7	□□□□□ -0.22
SF1-206	ENST00000413725	ARHGAP6	O43182	974 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	IGLV3-27	P01718	113 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	CORO1A	P31146	461 aa	Known RBP	13.69	□□□□□ -0.22
SF1-206	ENST00000413725	CCR1	P32246	355 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	ZNF143	P52747	638 aa	Predicted RBP	13.69	□□□□□ -0.22
SF1-206	ENST00000413725	PITX1	P78337	314 aa	Predicted RBP	13.69	□□□□□ -0.22
SF1-206	ENST00000413725	KRT83	P78385	493 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	ATP11A	P98196	1134 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	DEUP1	Q05D60	604 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	CCDC173	Q0VFZ6	552 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	MTA1	Q13330	715 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	PDGFRL	Q15198	375 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	CDO1	Q16878	200 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	TRNP1	Q6NT89	227 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	HTR3D	Q70Z44	454 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	STRADA	Q7RTN6	431 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	TXLNB	Q8N3L3	684 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	RIN3	Q8TB24	985 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	FNIP1	Q8TF40	1166 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	OSCP1	Q8WVF1	389 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	IRF7	Q92985	503 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	OTUB2	Q96DC9	234 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	ARHGEF26	Q96DR7	871 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	FCRL2	Q96LA5	508 aa	Predicted RBP	13.69	□□□□□ -0.22
SF1-206	ENST00000413725	LRRC3B	Q96PB8	259 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	TBCB	Q99426	244 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	CNPY3	Q9BT09	278 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	PACSIN1	Q9BY11	444 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
SF1-206	ENST00000413725	DUS2	Q9NX74	493 aa	Known RBP	13.69	□□□□□ -0.22
SF1-206	ENST00000413725	CTTNBP2NL	Q9P2B4	639 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	SLC12A6	Q9UHW9	1150 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	PCDHA13	Q9Y5I0	950 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	KIAA1549L	Q6ZVL6	1849 aa		13.69	□□□□□ -0.22
SF1-206	ENST00000413725	ATG2B	Q96BY7	2078 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	TMEM191C	A6NGB0	347 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	LATS1	O95835	1130 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	SRF	P11831	508 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	PSMA2	P25787	234 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	RDX	P35241	583 aa	Known RBP	13.68	□□□□□ -0.22
SF1-206	ENST00000413725	SLC11A2	P49281	568 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	PFKP	Q01813	784 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	PPP2R5D	Q14738	602 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	C15orf59	Q2T9L4	293 aa	Predicted RBP	13.68	□□□□□ -0.22
SF1-206	ENST00000413725	CCDC14	Q49A88	953 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	BRMS1L	Q5PSV4	323 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	KIAA1328	Q86T90	577 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	DENND1C	Q8IV53	801 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	RHOT2	Q8IXI1	618 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	ATP6V0D2	Q8N8Y2	350 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	ZNF564	Q8TBZ8	553 aa	Predicted RBP	13.68	□□□□□ -0.22
SF1-206	ENST00000413725	CSGALNACT1	Q8TDX6	532 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	RFFL	Q8WZ73	363 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	ATP2A3	Q93084	1043 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	SLC39A13	Q96H72	371 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	IP6K2	Q9UHH9	426 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	LCMT1	Q9UIC8	334 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	ANAPC7	Q9UJX3	599 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	DUSP12	Q9UNI6	340 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	WNT6	Q9Y6F9	365 aa		13.68	□□□□□ -0.22
SF1-206	ENST00000413725	SCAMP3	O14828	347 aa	Known RBP	13.67	□□□□□ -0.22
SF1-206	ENST00000413725	CCP110	O43303	1012 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	RNF8	O76064	485 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	NFATC1	O95644	943 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	MOCS2	O96007	188 aa	Predicted RBP	13.67	□□□□□ -0.22
SF1-206	ENST00000413725	TFE3	P19532	575 aa	Predicted RBP	13.67	□□□□□ -0.22
SF1-206	ENST00000413725	CXCR3	P49682	368 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	EIF4EBP2	Q13542	120 aa	Predicted RBP	13.67	□□□□□ -0.22
SF1-206	ENST00000413725	ZC3H12A	Q5D1E8	599 aa	Known RBP	13.67	□□□□□ -0.22
SF1-206	ENST00000413725	OTUD1	Q5VV17	481 aa	Predicted RBP	13.67	□□□□□ -0.22
SF1-206	ENST00000413725		Q6ZNB5	142 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	BBS7	Q8IWZ6	715 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	UBALD2	Q8IYN6	164 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	CPA6	Q8N4T0	437 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	ACRBP	Q8NEB7	543 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	FAM172A	Q8WUF8	416 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	DNASE1L2	Q92874	299 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	WBP2	Q969T9	261 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	AZIN2	Q96A70	460 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	ZFYVE19	Q96K21	471 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	BTN2A3P	Q96KV6	586 aa		13.67	□□□□□ -0.22
SF1-206	ENST00000413725	NCAPG	Q9BPX3	1015 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms