RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CRELD2Q6UXH1 353 aaPredicted RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 HERC6Q8IVU3 1022 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 PGBD3Q8N328 593 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 PPM1EQ8WY54 764 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 RSPH1Q8WYR4 309 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 KAT2BQ92831 832 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 ZIM3Q96PE6 472 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 TWNKQ96RR1 684 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 KLF6Q99612 283 aaPredicted RBP9.39□□□□□ -0.91
LIG4-202ENST00000405925 LPIN3Q9BQK8 851 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 APOL5Q9BWW9 433 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 SLC28A3Q9HAS3 691 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 SFMBT1Q9UHJ3 866 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 ADAM21Q9UKJ8 722 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 A0A1B0GUL6 1792 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 KAT6AQ92794 2004 aa9.39□□□□□ -0.91
LIG4-202ENST00000405925 PTPRJQ12913 1337 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 BTNL10A8MVZ5 291 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 PMM2O15305 246 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 NCAM2O15394 837 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 TKTP29401 623 aaKnown RBP9.38□□□□□ -0.91
LIG4-202ENST00000405925 SCNN1BP51168 640 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 GEMP55040 296 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 PPP2R2AP63151 447 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 PLEKHA7Q6IQ23 1121 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 MON1AQ86VX9 555 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 C4orf33Q8N1A6 199 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 COLGALT1Q8NBJ5 622 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 B3GALT6Q96L58 329 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 PPP1R2P1Q96PQ5 205 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 ACBD6Q9BR61 282 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 ASAH2Q9NR71 780 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 SALL4Q9UJQ4 1053 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 G3BP2Q9UN86 482 aaKnown RBP9.38□□□□□ -0.91
LIG4-202ENST00000405925 STYXL1Q9Y6J8 313 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 DNM1LO00429 736 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 CAPN15O75808 1086 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 CHRNB2P17787 502 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 RBL1P28749 1068 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 RABGGTBP53611 331 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 RHOAP61586 193 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 ARHGEF7Q14155 803 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 ZNF662Q6ZS27 426 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 CCNYL1Q8N7R7 359 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 CCDC197Q8NCU1 140 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 HTR3CQ8WXA8 447 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 KCNK16Q96T55 309 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 FRMD8Q9BZ67 464 aaPredicted RBP9.38□□□□□ -0.91
LIG4-202ENST00000405925 TRABDQ9H4I3 376 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 CERS4Q9HA82 394 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 PCDHGC3Q9UN70 934 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 WNK3Q9BYP7 1800 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 CAND2O75155 1236 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 GLUD1P00367 558 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 SLC5A3P53794 718 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 WDR93Q6P2C0 686 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 TPGS1Q6ZTW0 290 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 MON1BQ7L1V2 547 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 XYLT1Q86Y38 959 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 PDZD8Q8NEN9 1154 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 KCND1Q9NSA2 647 aa9.38□□□□□ -0.91
LIG4-202ENST00000405925 MRPS23Q9Y3D9 190 aaKnown RBP9.38□□□□□ -0.91
LIG4-202ENST00000405925 RNF103O00237 685 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 CES2O00748 559 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 NRP1O14786 923 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 ZSCAN5DPP0CG00 497 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 HSD17B3P37058 310 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 PSEN1P49768 467 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 SMAD3P84022 425 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 IRF5Q13568 498 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 PRSS55Q6UWB4 352 aaPredicted RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 NPNTQ6UXI9 565 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 FRA10AC1Q70Z53 315 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 TBC1D1Q86TI0 1168 aaPredicted RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 LINC00523Q86TU6 105 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 TMEM40Q8WWA1 233 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 HES6Q96HZ4 224 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 HNRNPABQ99729 332 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 PABPC3Q9H361 631 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 PIH1D1Q9NWS0 290 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 ARHGEF38Q9NXL2 777 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 SIX4Q9UIU6 781 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 DNMT3LQ9UJW3 386 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 PCDHB8Q9UN66 801 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 AAR2Q9Y312 384 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 TAF1LQ8IZX4 1826 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 CCDC195A0A1B0GUA6 201 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 RBM47A0AV96 593 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 MDM4O15151 490 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 STX7O15400 261 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 MSI1O43347 362 aaKnown RBP9.37□□□□□ -0.91
LIG4-202ENST00000405925 NDUFS3O75489 264 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 GMNNO75496 209 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 DAB1O75553 588 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 SPAG6O75602 509 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 HSPA4LO95757 839 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 ATXN8OSP0DMR3 200 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 GOT1P17174 413 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 TAC1P20366 129 aa9.37□□□□□ -0.91
LIG4-202ENST00000405925 GABRR2P28476 465 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms