RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 ZBTB49Q6ZSB9 765 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 MAP4K3Q8IVH8 894 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 TDRD5Q8NAT2 981 aaKnown RBP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 CENPTQ96BT3 561 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 HSD17B14Q9BPX1 270 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 PRDM5Q9NQX1 630 aaPredicted RBP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 R3HDM2Q9Y2K5 976 aaKnown RBP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 M0R3G1 203 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 ALBP02768 609 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 CREB1P16220 341 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 ITGB5P18084 799 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 GRK2P25098 689 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 RPL22P35268 128 aaKnown RBP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 TRPC1P48995 793 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 DRG2P55039 364 aaKnown RBP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 KCNK10P57789 538 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 CDK16Q00536 496 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 UBE3AQ05086 875 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 HYIQ5T013 277 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 MICU2Q8IYU8 434 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 CHST13Q8NET6 341 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 UPF1Q92900 1129 aaKnown RBP eCLIP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 CDRT15Q96T59 188 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 PRPF18Q99633 342 aaKnown RBP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 NAT9Q9BTE0 207 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 DCUN1D5Q9BTE7 237 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 MRIQ9BWK5 157 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 OSBPL7Q9BZF2 842 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 HPS4Q9NQG7 708 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 PCDHA2Q9Y5H9 948 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 E5RJQ4 531 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 TIMM44O43615 452 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 FKBP6O75344 327 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 ENDOD1O94919 500 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 MMRN1Q13201 1228 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 CHSY1Q86X52 802 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 CCDC60Q8IWA6 550 aaPredicted RBP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 GDPD5Q8WTR4 605 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 PPP1R13LQ8WUF5 828 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 ABI2Q9NYB9 513 aaPredicted RBP11.06□□□□□ -0.64
CCDC40-204ENST00000397545 PCDHGB4Q9UN71 923 aa11.06□□□□□ -0.64
CCDC40-204ENST00000397545 A0A096LPK6 155 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 RAG1P15918 1043 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 SERPINB8P50452 374 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 NCALDP61601 193 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 TBCCQ15814 346 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 C4orf22Q6V702 233 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 FASTKD5Q7L8L6 764 aaKnown RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 ADCK1Q86TW2 530 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 SNX32Q86XE0 403 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 KIAA2013Q8IYS2 634 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 OR5B17Q8NGF7 314 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 HASPINQ8TF76 798 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 CDK5RAP2Q96SN8 1893 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 ECSITQ9BQ95 431 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 EXOSC4Q9NPD3 245 aaKnown RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 GID8Q9NWU2 228 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 CYP39A1Q9NYL5 469 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 VAV3Q9UKW4 847 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 PARNO95453 639 aaKnown RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 PCSK1P29120 753 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 EPHX2P34913 555 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 MMP13P45452 471 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 MAP3K7CLP57077 242 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 BST1Q10588 318 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 SV2CQ496J9 727 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 ZRANB3Q5FWF4 1079 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 NOTUMQ6P988 496 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 KATNAL2Q8IYT4 538 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 KYQ8NBH2 561 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 STKLD1Q8NE28 680 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 ZNF555Q8NEP9 628 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 CALML6Q8TD86 181 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 ART4Q93070 314 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 VCPIP1Q96JH7 1222 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 TRIM54Q9BYV2 358 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 LRRC19Q9H756 370 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 THAP1Q9NVV9 213 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 MYH7BA7E2Y1 1941 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 TRPC5OSA6NMA1 111 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 ERI2A8K979 691 aaKnown RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 AP3B1O00203 1094 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 NR5A2O00482 541 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 PHGDHO43175 533 aaKnown RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 CYP2C8P10632 490 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 KDELR1P24390 212 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 MRPS22P82650 360 aaKnown RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 GALNTL6Q49A17 601 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 SLC45A4Q5BKX6 768 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 RNF219Q5W0B1 726 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 TAGAPQ8N103 731 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 ZNF512Q96ME7 567 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 OSMRQ99650 979 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 SEPT5Q99719 369 aaPredicted RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 MAN1C1Q9NR34 630 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 VANGL2Q9ULK5 521 aa11.05□□□□□ -0.64
CCDC40-204ENST00000397545 UBQLN1Q9UMX0 589 aaKnown RBP11.05□□□□□ -0.64
CCDC40-204ENST00000397545 A0A0B4J269 797 aa11.04□□□□□ -0.64
CCDC40-204ENST00000397545 ADM5C9JUS6 153 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms