RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 TBC1D13Q9NVG8 400 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 UBP1Q9NZI7 540 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 GPR75-ASB3A0A0A6YYF3 556 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ANKDD1BA6NHY2 528 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 RAD51BO15315 384 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ZBTB14O43829 449 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 TRIM13O60858 407 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ATP6V1B2P21281 511 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 SERPINA4P29622 427 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CTCFP49711 727 aaPredicted RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 C21orf59P57076 290 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 INHBEP58166 350 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 IL2P60568 153 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 BST2Q10589 180 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 GRIK4Q16099 956 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 KCNT1Q5JUK3 1230 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 SHC4Q6S5L8 630 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 RNF44Q7L0R7 432 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 PRPF39Q86UA1 669 aaKnown RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 TMC2Q8TDI7 906 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 ELMO1Q92556 727 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 REPS1Q96D71 796 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 QRFPRQ96P65 431 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 C2orf49Q9BVC5 232 aaPredicted RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 EFCAB1Q9HAE3 211 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CYP3A43Q9HB55 503 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.38□□□□□ -1.23
UPF2-203ENST00000397053 GPRC5DQ9NZD1 345 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 NCKIPSDQ9NZQ3 722 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 STK39Q9UEW8 545 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 SNCAIPQ9Y6H5 919 aa7.38□□□□□ -1.23
UPF2-203ENST00000397053 NCAM2O15394 837 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CABYRO75952 493 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CAMTA2O94983 1202 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 HSMCR30P0CW71 290 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CCDC130P13994 396 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 ACAT1P24752 427 aaKnown RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 SERPINB8P50452 374 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CSNK2BP67870 215 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 VAC14Q08AM6 782 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 MPP3Q13368 585 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CCDC92Q53HC0 331 aaPredicted RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 ARMC12Q5T9G4 340 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 BNIPLQ7Z465 357 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 GPR135Q8IZ08 494 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 AGGF1Q8N302 714 aaeCLIP7.37□□□□□ -1.236e-9■■■■□ 24.9
UPF2-203ENST00000397053 KCNS3Q9BQ31 491 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 ELL3Q9HB65 397 aaPredicted RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 VTA1Q9NP79 307 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 ASAH2Q9NR71 780 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 AGPAT3Q9NRZ7 376 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 MOXD2PA6NHM9 499 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 FAM25AB3EWG3 89 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 FAM25CB3EWG5 89 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 FAM25GB3EWG6 89 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 BAIAP3O94812 1187 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 SOX6P35712 828 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 MMP14P50281 582 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 ACSM2AQ08AH3 577 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CYLC2Q14093 348 aaPredicted RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 NFIL3Q16649 462 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 FSCN1Q16658 493 aaKnown RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 ACSM2BQ68CK6 577 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 PEG10Q86TG7 708 aaKnown RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 PARGQ86W56 976 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 BRSK2Q8IWQ3 736 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 MCEMP1Q8IX19 187 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 LINC00116Q8NCU8 138 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CELF6Q96J87 481 aaKnown RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 ADAM2Q99965 735 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 SPRTNQ9H040 489 aaPredicted RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 SNTG2Q9NY99 539 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 RRN3Q9NYV6 651 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 ADAM30Q9UKF2 790 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 USP15Q9Y4E8 981 aaPredicted RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 FAM205CA6NFA0 338 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 H3BN98 237 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 KLHL18O94889 574 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 TGFB3P10600 412 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 RRM1P23921 792 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 SARSP49591 514 aaKnown RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 HNMTP50135 292 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 SERPINH1P50454 418 aaKnown RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 COPAP53621 1224 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CCL23P55773 120 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 PTPN11Q06124 597 aaPredicted RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 ZNF618Q5T7W0 954 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 CYP20A1Q6UW02 462 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 TXNRD3Q86VQ6 643 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 SYTL5Q8TDW5 730 aaPredicted RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 ATP8B4Q8TF62 1192 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 LENG9Q96B70 501 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 PPP1R10Q96QC0 940 aaKnown RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 LRRC1Q9BTT6 524 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 KLHL31Q9H511 634 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 MANSC1Q9H8J5 431 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 KLHL1Q9NR64 748 aa7.37□□□□□ -1.23
UPF2-203ENST00000397053 GPN3Q9UHW5 284 aaPredicted RBP7.37□□□□□ -1.23
UPF2-203ENST00000397053 SATB2Q9UPW6 733 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms