RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 ZDHHC11BP0C7U3 371 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 IRS1P35568 1242 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 MSANTD2Q6P1R3 559 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 LILRA6Q6PI73 481 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 MAATS1Q7Z4T9 603 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 SERPINB11Q96P15 392 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 CCSER2Q9H7U1 834 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 CERS4Q9HA82 394 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 STIM2Q9P246 746 aa27.83■■■□□ 2.05
MSX1-201ENST00000382723 LPXNO60711 386 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 GOT1P17174 413 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 AIF1P55008 147 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 EIF4EBP2Q13542 120 aaPredicted RBP27.82■■■□□ 2.04
MSX1-201ENST00000382723 DNAJB7Q7Z6W7 309 aaPredicted RBP27.82■■■□□ 2.04
MSX1-201ENST00000382723 PCDH19Q8TAB3 1148 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 HOMER3Q9NSC5 361 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 SLTMQ9NWH9 1034 aaKnown RBP eCLIP27.82■■■□□ 2.04
MSX1-201ENST00000382723 CWC15Q9P013 229 aaKnown RBP27.82■■■□□ 2.04
MSX1-201ENST00000382723 ZSCAN5CA6NGD5 496 aaPredicted RBP27.82■■■□□ 2.04
MSX1-201ENST00000382723 CREB3O43889 395 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 FNTAP49354 379 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 CAMK1Q14012 370 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 CCNG2Q16589 344 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 MIB1Q86YT6 1006 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 KREMEN2Q8NCW0 462 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 CSPG4P5Q96PW8 444 aa27.82■■■□□ 2.04
MSX1-201ENST00000382723 OLA1Q9NTK5 396 aaKnown RBP27.82■■■□□ 2.04
MSX1-201ENST00000382723 TLR5O60602 858 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 GLUD1P00367 558 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 ARL4AP40617 200 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 VSNL1P62760 191 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 GUCY2DQ02846 1103 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 SCAPQ12770 1279 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 TFDP2Q14188 446 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 PQLC3Q8N755 202 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 PDZD8Q8NEN9 1154 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 MYRFLQ96LU7 910 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 GDF15Q99988 308 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 PCYOX1Q9UHG3 505 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 RASAL2Q9UJF2 1139 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 SNX10Q9Y5X0 201 aa27.81■■■□□ 2.04
MSX1-201ENST00000382723 FAM72CH0Y354 149 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 CCR1P32246 355 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 GPM6BQ13491 265 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 DHX34Q14147 1143 aaKnown RBP27.8■■■□□ 2.04
MSX1-201ENST00000382723 FAM72AQ5TYM5 149 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 FAM72DQ6L9T8 149 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 NPNTQ6UXI9 565 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 FAM72BQ86X60 149 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 VSIG1Q86XK7 387 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 FAF2Q96CS3 445 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 SAMD11Q96NU1 681 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 TRIM51Q9BSJ1 452 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 PBX4Q9BYU1 374 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 APOL1O14791 398 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 C8AP07357 584 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 PTGIRP43119 386 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 ERVK-21P61565 698 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 OTUD4Q01804 1114 aaKnown RBP27.8■■■□□ 2.04
MSX1-201ENST00000382723 C1orf228Q6PIY5 440 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 ACTL9Q8TC94 416 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 OVCA2Q8WZ82 227 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 PSMG2Q969U7 264 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 TRMT2BQ96GJ1 504 aaKnown RBP27.8■■■□□ 2.04
MSX1-201ENST00000382723 CCDC114Q96M63 670 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 EPB41L5Q9HCM4 733 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 TRPM5Q9NZQ8 1165 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 MARCH2Q9P0N8 246 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 DNPEPQ9ULA0 475 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 GREB1Q4ZG55 1949 aa27.8■■■□□ 2.04
MSX1-201ENST00000382723 ESYT3A0FGR9 886 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 ZNF840PA6NDX5 716 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 H0YGN5 161 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 LIASO43766 372 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 LRG1P02750 347 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 PECAM1P16284 738 aaPredicted RBP27.79■■■□□ 2.04
MSX1-201ENST00000382723 GGCXP38435 758 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 TBX4P57082 545 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 BRMS1LQ5PSV4 323 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 CCDC149Q6ZUS6 474 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 JAMLQ86YT9 394 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 RUNDC3BQ96NL0 473 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 NKX2-4Q9H2Z4 354 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 ARHGEF38Q9NXL2 777 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 TLR6Q9Y2C9 796 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 ZNF487B1APH4 448 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 H3BRJ5 948 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 APOC4-APOC2K7ER74 178 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 MOCS2O96007 188 aaPredicted RBP27.79■■■□□ 2.04
MSX1-201ENST00000382723 APOC2P02655 101 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 ITIH5Q86UX2 942 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 TTC13Q8NBP0 860 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 ANKRD7Q92527 254 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 SIK2Q9H0K1 926 aa27.79■■■□□ 2.04
MSX1-201ENST00000382723 HSFX4A0A1B0GTS1 333 aaPredicted RBP27.78■■■□□ 2.04
MSX1-201ENST00000382723 HSFX3A0A1B0GWH4 333 aaPredicted RBP27.78■■■□□ 2.04
MSX1-201ENST00000382723 EEF2KO00418 725 aaKnown RBP27.78■■■□□ 2.04
MSX1-201ENST00000382723 HMBSP08397 361 aa27.78■■■□□ 2.04
MSX1-201ENST00000382723 AMPD1P23109 780 aa27.78■■■□□ 2.04
MSX1-201ENST00000382723 CLCN4P51793 760 aa27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms