RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 SEL1L2Q5TEA6 688 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 JAMLQ86YT9 394 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 ANKS4BQ8N8V4 417 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 FAM172AQ8WUF8 416 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 ACSF2Q96CM8 615 aaPredicted RBP12.92□□□□□ -0.34
CIITA-202ENST00000381835 POPDC2Q9HBU9 364 aa12.92□□□□□ -0.34
CIITA-202ENST00000381835 TNFRSF10BO14763 440 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 RGS16O15492 202 aaPredicted RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 LTFP02788 710 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 IL1R2P27930 398 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 MATKP42679 507 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 MAGEA10P43363 369 aaPredicted RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 MAGEA11P43364 429 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 SMARCB1Q12824 385 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 XRCC4Q13426 336 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 HADHQ16836 314 aaKnown RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 SCYL2Q6P3W7 929 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 ARCQ7LC44 396 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 TAX1BP1Q86VP1 789 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 PGM2Q96G03 612 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 C8orf48Q96LL4 319 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 DDX23Q9BUQ8 820 aaKnown RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 EPB41L4BQ9H329 900 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 MRPL17Q9NRX2 175 aaKnown RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 USP18Q9UMW8 372 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 NAALADL1Q9UQQ1 740 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 NR2E3Q9Y5X4 410 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 USP3Q9Y6I4 520 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 CDH23Q9H251 3354 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 CCT8L1PA6NM43 557 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 GRXCR1A8MXD5 290 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 DPYSL4O14531 572 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 MYOGP15173 224 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 CTNNB1P35222 781 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 SLC25A11Q02978 314 aaKnown RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 SLC29A2Q14542 456 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 SYPL2Q5VXT5 272 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 PM20D1Q6GTS8 502 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 NUP93Q8N1F7 819 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 FBXO25Q8TCJ0 367 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 SP7Q8TDD2 431 aaPredicted RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 EDEM1Q92611 657 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 RNF25Q96BH1 459 aaPredicted RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 PLVAPQ9BX97 442 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 ADAM33Q9BZ11 813 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 MTUS1Q9ULD2 1270 aa12.91□□□□□ -0.34
CIITA-202ENST00000381835 TPX2Q9ULW0 747 aaKnown RBP12.91□□□□□ -0.34
CIITA-202ENST00000381835 SYNJ2BP-COX16A0A087WUM0 186 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 PI4K2BG5E9Z4 385 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 DAB1O75553 588 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 DNAJC8O75937 253 aaPredicted RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 FYNP06241 537 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 NCAM1P13591 858 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 NOS2P35228 1153 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 PTPN9P43378 593 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 MMP13P45452 471 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 SULT1E1P49888 294 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 ATXN1P54253 815 aaKnown RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 PITX1P78337 314 aaPredicted RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 SHHQ15465 462 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 WLSQ5T9L3 541 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 RASIP1Q5U651 963 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 FAM109BQ6ICB4 259 aaPredicted RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 BHLHA9Q7RTU4 235 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 SPRED2Q7Z698 418 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 KATNAL2Q8IYT4 538 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 C2orf15Q8WU43 125 aaKnown RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 ZNF317Q96PQ6 595 aaPredicted RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 TBCBQ99426 244 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 ALG13Q9NP73 1137 aaKnown RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 COX16Q9P0S2 106 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 GBF1Q92538 1859 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 GREB1Q4ZG55 1949 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 PRPSAP2O60256 369 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 KRT1P04264 644 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 KRT7P08729 469 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 HAPLN1P10915 354 aaPredicted RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 PCK1P35558 622 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 BMPR1AP36894 532 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 DRG2P55039 364 aaKnown RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 HDAC4P56524 1084 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 USP46P62068 366 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 SF3A3Q12874 501 aaKnown RBP eCLIP12.9□□□□□ -0.34
CIITA-202ENST00000381835 C6orf118Q5T5N4 469 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 LRRC38Q5VT99 294 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 BSPRYQ5W0U4 402 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 ZDHHC24Q6UX98 284 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 DENND5BQ6ZUT9 1274 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 ZNF461Q8TAF7 563 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 HSPH1Q92598 858 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 SLC2A13Q96QE2 648 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 PEBP4Q96S96 227 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 ZBP1Q9H171 429 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 INTS9Q9NV88 658 aaKnown RBP12.9□□□□□ -0.34
CIITA-202ENST00000381835 MCM8Q9UJA3 840 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 STAP1Q9ULZ2 295 aa12.9□□□□□ -0.34
CIITA-202ENST00000381835 LRRD1A4D1F6 860 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 LINC01553A4QN01 128 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 PHF2O75151 1096 aa12.89□□□□□ -0.35
CIITA-202ENST00000381835 TRUB2O95900 331 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms