RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 SLC26A11Q86WA9 606 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 LRRC34Q8IZ02 419 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 MYCBPAPQ8TBZ2 947 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 GIPC2Q8TF65 315 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 SNX27Q96L92 541 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 NDFIP2Q9NV92 336 aa14.96□□□□□ -0.01
TCOF1-202ENST00000377797 SPECC1L-ADORA2AF8WAN1 911 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 EDIL3O43854 480 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 OPHN1O60890 802 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 MATKP42679 507 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 IFI35P80217 286 aaPredicted RBP14.96□□□□□ -0.02
TCOF1-202ENST00000377797 TARBP2Q15633 366 aaKnown RBP14.96□□□□□ -0.02
TCOF1-202ENST00000377797 OLFML2BQ68BL8 750 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 DCLRE1AQ6PJP8 1040 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 XYLT1Q86Y38 959 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 ZCCHC9Q8N567 271 aaKnown RBP14.96□□□□□ -0.02
TCOF1-202ENST00000377797 WWP1Q9H0M0 922 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 PTCH2Q9Y6C5 1203 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 SLC30A1Q9Y6M5 507 aa14.96□□□□□ -0.02
TCOF1-202ENST00000377797 TCRBV7S2A1N4TA0A589 114 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 NDUFS3O75489 264 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 LAMB3Q13751 1172 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 FSCBQ5H9T9 825 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 CINPQ9BW66 212 aaPredicted RBP14.95□□□□□ -0.02
TCOF1-202ENST00000377797 NT5MQ9NPB1 228 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 ABCC13Q9NSE7 274 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 NSMCE4AQ9NXX6 385 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 XPO1O14980 1071 aaKnown RBP14.95□□□□□ -0.02
TCOF1-202ENST00000377797 MAGEA9P43362 315 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 LILRA4P59901 499 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 IKBKEQ14164 716 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 BLOC1S5Q8TDH9 187 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 FIZ1Q96SL8 496 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 VCX3BQ9H321 246 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 LRCH4O75427 683 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 UNGP13051 313 aaPredicted RBP14.95□□□□□ -0.02
TCOF1-202ENST00000377797 RPL22P35268 128 aaKnown RBP14.95□□□□□ -0.02
TCOF1-202ENST00000377797 MRPS5P82675 430 aaKnown RBP14.95□□□□□ -0.02
TCOF1-202ENST00000377797 NRDE2Q9H7Z3 1164 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 SMPD4Q9NXE4 827 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 CASP2P42575 452 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 PMF1Q6P1K2 205 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 R3HDM2Q9Y2K5 976 aaKnown RBP14.95□□□□□ -0.02
TCOF1-202ENST00000377797 USH1CQ9Y6N9 552 aa14.95□□□□□ -0.02
TCOF1-202ENST00000377797 EPHB3P54753 998 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 DBN1Q16643 649 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 BORCS6Q96GS4 357 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 MYO5AQ9Y4I1 1855 aaKnown RBP14.94□□□□□ -0.02
TCOF1-202ENST00000377797 GFAPP14136 432 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 RBBP5Q15291 538 aaKnown RBP14.94□□□□□ -0.02
TCOF1-202ENST00000377797 MARC1Q5VT66 337 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 ALLCQ8N6M5 410 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 CNGB3Q9NQW8 809 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 TUFMP49411 452 aaKnown RBP14.94□□□□□ -0.02
TCOF1-202ENST00000377797 SLC45A4Q5BKX6 768 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 TSPAN17Q96FV3 270 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 MANSC1Q9H8J5 431 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 VANGL2Q9ULK5 521 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 PCDHB12Q9Y5F1 795 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 SF3B1O75533 1304 aaKnown RBP eCLIP14.94□□□□□ -0.026e-6■■■■■ 114.9
TCOF1-202ENST00000377797 TNRC6CQ9HCJ0 1690 aaKnown RBP14.94□□□□□ -0.02
TCOF1-202ENST00000377797 TOMM70O94826 608 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 RTN3O95197 1032 aaPredicted RBP14.94□□□□□ -0.02
TCOF1-202ENST00000377797 BMPR2Q13873 1038 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 CDCA2Q69YH5 1023 aaPredicted RBP14.94□□□□□ -0.02
TCOF1-202ENST00000377797 E2F7Q96AV8 911 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 FICDQ9BVA6 458 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 MARCH2Q9P0N8 246 aa14.94□□□□□ -0.02
TCOF1-202ENST00000377797 RAMP2O60895 175 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 GOT1P17174 413 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 KPNA1P52294 538 aaPredicted RBP14.93□□□□□ -0.02
TCOF1-202ENST00000377797 PDAP1Q13442 181 aaKnown RBP14.93□□□□□ -0.02
TCOF1-202ENST00000377797 KIF19Q2TAC6 998 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 SLC24A5Q71RS6 500 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 UNC45BQ8IWX7 931 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 MREGQ8N565 214 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 LZTR1Q8N653 840 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 FNIP1Q8TF40 1166 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 PWWP2AQ96N64 755 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 EGFL8Q99944 293 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 ZNF670Q9BS34 389 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 HACD1B0YJ81 288 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 NT5C1B-RDH14C9J2C7 533 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 SMIM24O75264 130 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 ENDOD1O94919 500 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 ITGAVP06756 1048 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 ASPAP45381 313 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 CLCNKBP51801 687 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 B3GNT9Q6UX72 402 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 TAS1R3Q7RTX0 852 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 GPR63Q9BZJ6 419 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 ECT2Q9H8V3 914 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 OLA1Q9NTK5 396 aaKnown RBP14.93□□□□□ -0.02
TCOF1-202ENST00000377797 CPSF2Q9P2I0 782 aaKnown RBP14.93□□□□□ -0.02
TCOF1-202ENST00000377797 FAM8A1Q9UBU6 413 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 NR2E1Q9Y466 385 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 CCDC22O60826 627 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 USP12O75317 370 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 PPFIA2O75334 1257 aa14.93□□□□□ -0.02
TCOF1-202ENST00000377797 TPH1P17752 444 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms