RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PAQR9Q6ZVX9 377 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 CHSY1Q86X52 802 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 C2orf69Q8N8R5 385 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 FAM149B1Q96BN6 582 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 TRIM56Q9BRZ2 755 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 PTGESO14684 152 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 KRT37O76014 449 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 IGFBP6P24592 240 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 ARL4AP40617 200 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 PITX1P78337 314 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 CCL14Q16627 93 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 DCAF6Q58WW2 860 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 OTUD1Q5VV17 481 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 ZNF398Q8TD17 642 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 TFB1MQ8WVM0 346 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 HTR3CQ8WXA8 447 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 RCOR3Q9P2K3 495 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 MAD1L1Q9Y6D9 718 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 C17orf102A2RUQ5 167 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 C2CD2LO14523 706 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 UGT1A9O60656 530 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 CAPN15O75808 1086 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 VAV1P15498 845 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 PTPN1P18031 435 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 ACAT1P24752 427 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 LRPAP1P30533 357 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 MRPS5P82675 430 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 NT5C3BQ969T7 300 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 UGT1A7Q9HAW7 530 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 UGT1A10Q9HAW8 530 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 UGT1A8Q9HAW9 530 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 ARHGEF4Q9NR80 690 aa21.53■■□□□ 1.04
CCDC88B-203ENST00000359902 HACD1B0YJ81 288 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 CYB561D2O14569 222 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 DAB1O75553 588 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 ATP5HO75947 161 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 NPR3P17342 541 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 NDUFV1P49821 464 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 OVGP1Q12889 678 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 WSCD1Q658N2 575 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 TRMT10BQ6PF06 316 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 NLRP9Q7RTR0 991 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 BNIPLQ7Z465 357 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 PSTKQ8IV42 348 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 NME8Q8N427 588 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 LGMNQ99538 433 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 XAB2Q9HCS7 855 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 TMPRSS4Q9NRS4 437 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 KANSL3Q9P2N6 904 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 CELF2O95319 508 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 TROVE2P10155 538 aaKnown RBP eCLIP21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 SLC8A3P57103 927 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 ANKRD20A2Q5SQ80 823 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 LGSNQ5TDP6 509 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 ANKRD20A1Q5TYW2 823 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 ANKRD20A3Q5VUR7 823 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 TWF2Q6IBS0 349 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 CDHR3Q6ZTQ4 885 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 RFWD2Q8NHY2 731 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 GSDMBQ8TAX9 411 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 KCTD13Q8WZ19 329 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 TTC17Q96AE7 1141 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 ZFP42Q96MM3 310 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 PPP1R10Q96QC0 940 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 SRPK1Q96SB4 655 aaKnown RBP21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 NPY6RQ99463 290 aa21.52■■□□□ 1.04
CCDC88B-203ENST00000359902 A0A0A0MRY4 1105 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 FAM159BA6NKW6 160 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 COPEO14579 308 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 RFPL1O75677 317 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 CSH1P0DML2 217 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 CSH2P0DML3 217 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 T-ENOLP0DO92 83 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 SLC8A1P32418 973 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 NOS2P35228 1153 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 KIAA0319Q5VV43 1072 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 DENND5BQ6ZUT9 1274 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 SPATA13Q96N96 652 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 TSSK1BQ9BXA7 367 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 AP5M1Q9H0R1 490 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 STK38LQ9Y2H1 464 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 GABRDO14764 452 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 MFSD11O43934 449 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 TARSP26639 723 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 PRKD1Q15139 912 aaPredicted RBP21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 CLEC20AQ6ZU45 233 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 BZW1Q7L1Q6 419 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 CEP57Q86XR8 500 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 PRDM16Q9HAZ2 1276 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 HAO1Q9UJM8 370 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 DCTN4Q9UJW0 460 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 PCDHA11Q9Y5I1 949 aa21.51■■□□□ 1.03
CCDC88B-203ENST00000359902 HOXC8P31273 242 aa21.5■■□□□ 1.03
CCDC88B-203ENST00000359902 SERPINB4P48594 390 aa21.5■■□□□ 1.03
CCDC88B-203ENST00000359902 NBPF20Q3BBV1 942 aa21.5■■□□□ 1.03
CCDC88B-203ENST00000359902 SYPL2Q5VXT5 272 aa21.5■■□□□ 1.03
CCDC88B-203ENST00000359902 RNF139Q8WU17 664 aa21.5■■□□□ 1.03
CCDC88B-203ENST00000359902 LRMDAQ9H2I8 198 aa21.5■■□□□ 1.03
CCDC88B-203ENST00000359902 LRRC4Q9HBW1 653 aa21.5■■□□□ 1.03
CCDC88B-203ENST00000359902 SYNJ2BP-COX16A0A087WUM0 186 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms