RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 KLF1Q13351 362 aaPredicted RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 WLSQ5T9L3 541 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 RNF217Q8TC41 542 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 RNF157Q96PX1 679 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 CADM1Q9BY67 442 aaKnown RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 WWP1Q9H0M0 922 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 ACSS3Q9H6R3 686 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 IARS2Q9NSE4 1012 aaKnown RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 CNTNAP2Q9UHC6 1331 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 CCL22O00626 93 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 TPP1O14773 563 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 BNIP3LO60238 219 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 SEC24DO94855 1032 aaPredicted RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 ETFBP38117 255 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 HIC1Q14526 733 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 RALGPS1Q5JS13 557 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 IYDQ6PHW0 289 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 MYLK4Q86YV6 388 aaPredicted RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 DEFB107AQ8IZN7 70 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 BEST2Q8NFU1 509 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 EIF2AQ9BY44 585 aaKnown RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 WDR55Q9H6Y2 383 aaPredicted RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 CHST12Q9NRB3 414 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 PRMT7Q9NVM4 692 aaPredicted RBP12.32□□□□□ -0.44
USP1-201ENST00000339950 SLC24A2Q9UI40 661 aa12.32□□□□□ -0.44
USP1-201ENST00000339950 MYO7AQ13402 2215 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 MAFO75444 373 aaPredicted RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 HOXC6P09630 235 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 MX2P20592 715 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 USP10Q14694 798 aaKnown RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 FAM43BQ6ZT52 329 aaPredicted RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 STRA8Q7Z7C7 330 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 PLD5Q8N7P1 536 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 BFARQ9NZS9 450 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 SHANK3Q9BYB0 1731 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 C9JVG2 144 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 HNRNPCP07910 306 aaKnown RBP eCLIP12.31□□□□□ -0.44
USP1-201ENST00000339950 IQCF3P0C7M6 154 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 VDRP11473 427 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 STIP1P31948 543 aaKnown RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 NUDT2P50583 147 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 HADHBP55084 474 aaKnown RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 TPI1P60174 286 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 TAP1Q03518 808 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 ART3Q13508 389 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 LPCAT4Q643R3 524 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 ARMCX2Q7L311 632 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 CCDC185Q8N715 623 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 C12orf50Q8NA57 414 aaPredicted RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 PDCD6IPQ8WUM4 868 aaKnown RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 OPTNQ96CV9 577 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 VCPIP1Q96JH7 1222 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 BTBD10Q9BSF8 475 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 TMEM109Q9BVC6 243 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 PIF1Q9H611 641 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 SPDYE5A6NIY4 337 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 RNF103O00237 685 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 EEF2KO00418 725 aaKnown RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 TBC1D12O60347 775 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 RECQL4O94761 1208 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 MTA2O94776 668 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 STAMBPO95630 424 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 TGM2P21980 687 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 ASPAP45381 313 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 PAPOLAP51003 745 aaKnown RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 SLC10A6Q3KNW5 377 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 UNC5AQ6ZN44 842 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 SCUBE1Q8IWY4 988 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 RBM15BQ8NDT2 890 aaKnown RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 CHST13Q8NET6 341 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 PCDH19Q8TAB3 1148 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 LPPQ93052 612 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 APOPT1Q96IL0 206 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 TBCBQ99426 244 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 PRDM12Q9H4Q4 367 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 XAB2Q9HCS7 855 aaKnown RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 TAS2R1Q9NYW7 299 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 WDR35Q9P2L0 1181 aa12.31□□□□□ -0.44
USP1-201ENST00000339950 BARX2Q9UMQ3 279 aaPredicted RBP12.31□□□□□ -0.44
USP1-201ENST00000339950 NPM3O75607 178 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 SORBS2O94875 1100 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 ITGAVP06756 1048 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 ADORA2AP29274 412 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 LAMB3Q13751 1172 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 TMEM259Q4ZIN3 620 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 ACSBG2Q5FVE4 666 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 CDKL3Q8IVW4 592 aaPredicted RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 PABPC5Q96DU9 382 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 NUF2Q9BZD4 464 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 CPSF3Q9UKF6 684 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 MTO1Q9Y2Z2 717 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 STARD13Q9Y3M8 1113 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 DPPA5A6NC42 116 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 LGALS2P05162 132 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 CCR10P46092 362 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 FKBP1AP62942 108 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 YWHAZP63104 245 aaKnown RBP12.3□□□□□ -0.44
USP1-201ENST00000339950 PRAMEP78395 509 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 BOLA3Q53S33 107 aa12.3□□□□□ -0.44
USP1-201ENST00000339950 EFHC2Q5JST6 749 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms