RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 KCNN4O15554 427 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 RIPK2O43353 540 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 AMHP03971 560 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 GOLGA6DP0CG33 693 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 ITGB8P26012 769 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 STIP1P31948 543 aaKnown RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 MAGEA11P43364 429 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 CTCFP49711 727 aaPredicted RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 PGFP49763 221 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 SCAPQ12770 1279 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 SLC29A2Q14542 456 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 MORF4L2Q15014 288 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 RNASEH2BQ5TBB1 312 aaKnown RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 ANKS3Q6ZW76 656 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 TMCO2Q7Z6W1 182 aaPredicted RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 CCDC33Q8N5R6 958 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 DNAJC5GQ8N7S2 189 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 LRRN4Q8WUT4 740 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 RNF34Q969K3 372 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 WDCPQ9H6R7 721 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 CWH43Q9H720 699 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 GOLGA6AQ9NYA3 693 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 PCDH10Q9P2E7 1040 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 MKI67P46013 3256 aaKnown RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 MTMR11A4FU01 709 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 I6L893 689 aaPredicted RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 NDC80O14777 642 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 SOAT2O75908 522 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 CSF2RAP15509 400 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 RBL1P28749 1068 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 CXCR3P49682 368 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 LBX1P52954 281 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 SLC10A2Q12908 348 aaPredicted RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 PKN2Q16513 984 aaKnown RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 SPOUT1Q5T280 376 aaKnown RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 RNF19BQ6ZMZ0 732 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 TRMT10CQ7L0Y3 403 aaKnown RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 BEND5Q7L4P6 421 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 ZCCHC9Q8N567 271 aaKnown RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 UHMK1Q8TAS1 419 aaKnown RBP13.87□□□□□ -0.19
HMGB1-202ENST00000339872 GPR152Q8TDT2 470 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 TKTL2Q9H0I9 626 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 CENPHQ9H3R5 247 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 SHOC2Q9UQ13 582 aa13.87□□□□□ -0.19
HMGB1-202ENST00000339872 ABHD14A-ACY1A0A1B0GW23 586 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 A0A1W2PQH9 124 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 TRIM43BA6NCK2 446 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 FAM72CH0Y354 149 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 MFSD11O43934 449 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 TIMP1P01033 207 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 SHBGP04278 402 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 NUDT17P0C025 328 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 MYZAPP0CAP1 466 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 NR2C2P49116 596 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 EIF3BP55884 814 aaKnown RBP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 C1QTNF8P60827 252 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 DEFB103AP81534 67 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 GPR17Q13304 367 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 MGAT5BQ3V5L5 792 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 FAM72AQ5TYM5 149 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 KCTD16Q68DU8 428 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 FAM72DQ6L9T8 149 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 RFX8Q6ZV50 586 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 PCGF5Q86SE9 256 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 SCD5Q86SK9 330 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 FAM72BQ86X60 149 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 CDKL3Q8IVW4 592 aaPredicted RBP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 SPPL2BQ8TCT7 592 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 TRIM43Q96BQ3 446 aaPredicted RBP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 SEPT5Q99719 369 aaPredicted RBP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 FBXO44Q9H4M3 255 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 NMUR1Q9HB89 426 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 DTLQ9NZJ0 730 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 SLC27A5Q9Y2P5 690 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 CDY1Q9Y6F8 540 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 BCLAF3A2AJT9 711 aaKnown RBP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 CFAP69A5D8W1 941 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 TBC1D4O60343 1298 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 ACSL3O95573 720 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 RAG1P15918 1043 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 ACTN2P35609 894 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 TPI1P60174 286 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 USP46P62068 366 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 BASP1P80723 227 aaKnown RBP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 KRT71Q3SY84 523 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 FAM182AQ5T1J6 154 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 NECAB2Q7Z6G3 386 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 PPIL6Q8IXY8 311 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 CPT1BQ92523 772 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 PRCCQ92733 491 aaPredicted RBP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 TOP1MTQ969P6 601 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 RBM15Q96T37 977 aaKnown RBP eCLIP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 FOXP3Q9BZS1 431 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 CRISPLD1Q9H336 500 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 USP29Q9HBJ7 922 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 TMBIM4Q9HC24 238 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 NUDT5Q9UKK9 219 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 SCML2Q9UQR0 700 aa13.86□□□□□ -0.19
HMGB1-202ENST00000339872 FARP1Q9Y4F1 1045 aaPredicted RBP13.86□□□□□ -0.19
HMGB1-202ENST00000339872 KIAA0100Q14667 2235 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms