RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 RRAGCQ9HB90 399 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 SERHLQ9NQF3 203 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 FAM153AQ9UHL3 310 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 TNS3Q68CZ2 1445 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 HLA-DQA2P01906 255 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 ZSWIM7Q19AV6 140 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 RSBN1Q5VWQ0 802 aaPredicted RBP12.95□□□□□ -0.34
SDC3-201ENST00000336798 KLHL24Q6TFL4 600 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 DUSP12Q9UNI6 340 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 FZD1Q9UP38 647 aa12.95□□□□□ -0.34
SDC3-201ENST00000336798 IQCMA0A1B0GVH7 501 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 PPP1R3GB7ZBB8 358 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 CYP11B1P15538 503 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 CYP2F1P24903 491 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 ST13P50502 369 aaKnown RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 OASLQ15646 514 aaKnown RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 OTUD3Q5T2D3 398 aaPredicted RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 SLC30A10Q6XR72 485 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 RGL4Q8IZJ4 473 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 RXFP2Q8WXD0 754 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 USP7Q93009 1102 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 OLFM1Q99784 485 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 LRRC40Q9H9A6 602 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 EFCAB1Q9HAE3 211 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 NOD2Q9HC29 1040 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 PEX1O43933 1283 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 SUPT20HL2P0C7V6 817 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 THRAP10827 490 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 BCAT1P54687 386 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 KCNMA1Q12791 1236 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 SFSWAPQ12872 951 aaKnown RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 PTGISQ16647 500 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 MARK2Q7KZI7 788 aaKnown RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 MTDHQ86UE4 582 aaKnown RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 DDHD1Q8NEL9 900 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 PAFAH2Q99487 392 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 MFSD1Q9H3U5 465 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 RBM22Q9NW64 420 aaKnown RBP eCLIP12.94□□□□□ -0.34
SDC3-201ENST00000336798 SIK3Q9Y2K2 1263 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 TAF6LQ9Y6J9 622 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 FXR2P51116 673 aaKnown RBP eCLIP12.94□□□□□ -0.34
SDC3-201ENST00000336798 KBTBD12Q3ZCT8 623 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 FAM171A1Q5VUB5 890 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 CDK20Q8IZL9 346 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 CLYBLQ8N0X4 340 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 RUBCNQ92622 972 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 EXO5Q9H790 373 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 AK9Q5TCS8 1911 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 TTC37Q6PGP7 1564 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 RFX7Q2KHR2 1363 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 ZNF521Q96K83 1311 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 CYP2C8P10632 490 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 CYP11B2P19099 503 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 OR1E1P30953 314 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 EIF2B2P49770 351 aaKnown RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 TCHHL1Q5QJ38 904 aaPredicted RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 LRRC6Q86X45 466 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 IZUMO1Q8IYV9 350 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 TLR8Q9NR97 1041 aaKnown RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 HIRAP54198 1017 aaPredicted RBP12.94□□□□□ -0.34
SDC3-201ENST00000336798 GRB10Q13322 594 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 PLEKHA7Q6IQ23 1121 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 C4orf22Q6V702 233 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 SCUBE1Q8IWY4 988 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 PHACTR1Q9C0D0 580 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 OSGEPQ9NPF4 335 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 VANGL2Q9ULK5 521 aa12.94□□□□□ -0.34
SDC3-201ENST00000336798 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.94□□□□□ -0.34
SDC3-201ENST00000336798 WDR27A2RRH5 827 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ADIGQ0VDE8 80 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ITGB3BPQ13352 177 aaPredicted RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 TAF13Q15543 124 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ARMCX4Q5H9R4 360 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ZNF280DQ6N043 979 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 RIBC1Q8N443 379 aaPredicted RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 NMD3Q96D46 503 aaKnown RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 TMEM176AQ96HP8 235 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 MKNK1Q9BUB5 465 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 C10orf88Q9H8K7 445 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 TMEM39AQ9NV64 488 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 FAM86B2P0C5J1 330 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 PLD1Q13393 1074 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ZNF484Q5JVG2 852 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 CYP4X1Q8N118 509 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 PDGFDQ9GZP0 370 aaPredicted RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 H3BN98 237 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 TGM3Q08188 693 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 PRKAA1Q13131 559 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 ZNF57Q68EA5 555 aaPredicted RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 KLHL31Q9H511 634 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 KLF15Q9UIH9 416 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 CNOT3O75175 753 aaKnown RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 CNPP09543 421 aaKnown RBP12.93□□□□□ -0.34
SDC3-201ENST00000336798 FAM228BP0C875 321 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 GHRP10912 638 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 RRM1P23921 792 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 CNGA2Q16280 664 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 PKN1Q16512 942 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 SPOCD1Q6ZMY3 1216 aa12.93□□□□□ -0.34
SDC3-201ENST00000336798 SERPINB12Q96P63 405 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms