RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CFAP206Q8IYR0 622 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PPM1NQ8N819 430 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ATG4AQ8WYN0 398 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 BTBD9Q96Q07 612 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 ECSITQ9BQ95 431 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 INTS2Q9H0H0 1204 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 GPCPD1Q9NPB8 672 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 GFOD1Q9NXC2 390 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 DOLKQ9UPQ8 538 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 CCDC144AA2RUR9 1427 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 WFS1O76024 890 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 UMPSP11172 480 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 MARK3P27448 753 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 MATKP42679 507 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 DR1Q01658 176 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 METTL21CQ5VZV1 264 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 IL31Q6EBC2 164 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 TRAPPC11Q7Z392 1133 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 STK35Q8TDR2 534 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 DSCC1Q9BVC3 393 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 AK6Q9Y3D8 172 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 POLR3HQ9Y535 204 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 KIF24Q5T7B8 1368 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 IFNA6P05013 189 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 BRAFP15056 766 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PAICSP22234 425 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 MIB1Q86YT6 1006 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PEX5LQ8IYB4 626 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 PHACTR4Q8IZ21 702 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 FRZBQ92765 325 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 FMO2Q99518 471 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 UBTD1Q9HAC8 227 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 SHOC2Q9UQ13 582 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 MAU2Q9Y6X3 613 aa7.83□□□□□ -1.16
LIMCH1-201ENST00000313860 FYCO1Q9BQS8 1478 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PCF11O94913 1555 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CUX1P39880 1505 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 RPS6KA4O75676 772 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 STK17BO94768 372 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 TPPPO94811 219 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 FARP2O94887 1054 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ANGPTL1O95841 491 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 FBXO47Q5MNV8 452 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 TMEM132EQ6IEE7 984 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ARHGAP36Q6ZRI8 547 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF808Q8N4W9 903 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 APPBP2Q92624 585 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 THUMPD3Q9BV44 507 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PAPOLGQ9BWT3 736 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 RTFDC1Q9BY42 306 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ABCB6Q9NP58 842 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PCDHGC3Q9UN70 934 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 COG5Q9UP83 839 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 AP4E1Q9UPM8 1137 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PHF24Q9UPV7 400 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 METTL18O95568 372 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ZNF37AP17032 561 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SLC16A2P36021 539 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 OAZ1P54368 228 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CHRNA6Q15825 494 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 GXYLT1Q4G148 440 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CCDC33Q8N5R6 958 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 STARD8Q92502 1023 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 LARP4BQ92615 738 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SGCDQ92629 289 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ASIC4Q96FT7 647 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 FEM1CQ96JP0 617 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ANKRD27Q96NW4 1050 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 RMDN3Q96TC7 470 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ABI2Q9NYB9 513 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 DHRS7Q9Y394 339 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PSMD3O43242 534 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 IFNA2P01563 188 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 ELK3P41970 407 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 NME5P56597 212 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 MC1RQ01726 317 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 NFATC4Q14934 902 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CYP51A1Q16850 503 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 FAM171BQ6P995 826 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CASP12Q6UXS9 341 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 B3GALNT2Q8NCR0 500 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 OR2L2Q8NH16 312 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 JARID2Q92833 1246 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 MYD88Q99836 296 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 TGIF2Q9GZN2 237 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SLITRK6Q9H5Y7 841 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 C19orf12Q9NSK7 152 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 TRPV2Q9Y5S1 764 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CADPSQ9ULU8 1353 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 MAST3O60307 1309 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SOS2Q07890 1332 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 A8MV72 311 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 RPS6KA5O75582 802 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 CLEC3BP05452 202 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PGK2P07205 417 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 SPAM1P38567 509 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 BTDP43251 543 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PITPNAQ00169 270 aa7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 RPL6Q02878 288 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-201ENST00000313860 PLEKHG6Q3KR16 790 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms