RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 METTL12A8MUP2 240 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 CBFA2T3O75081 653 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 NR3C1P04150 777 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 SLFN14P0C7P3 912 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 MAOBP27338 520 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 CASP1P29466 404 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 ME1P48163 572 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 TPMTP51580 245 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 DLG4P78352 724 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 SUZ12Q15022 739 aaKnown RBP15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 DCAF12L1Q5VU92 463 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 FYB2Q5VWT5 728 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 RESP18Q5W5W9 173 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 ZCCHC9Q8N567 271 aaKnown RBP15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 TTC39CQ8N584 583 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 SETD7Q8WTS6 366 aaKnown RBP15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 DUSP16Q9BY84 665 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 MIR1-1HGQ9H1L0 117 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 KCTD10Q9H3F6 313 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 GAREM1Q9H706 876 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 CD93Q9NPY3 652 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 ELOVL2Q9NXB9 296 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 USP3Q9Y6I4 520 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 KNTC1P50748 2209 aa15.51■□□□□ 0.07
CCDC88B-201ENST00000301897 GCN1Q92616 2671 aaKnown RBP15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 K7ELQ4 463 aaPredicted RBP15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 MDM4O15151 490 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 FLRT2O43155 660 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 CALUO43852 315 aaPredicted RBP15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 CILPO75339 1184 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 MYL1P05976 194 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 CORO1AP31146 461 aaKnown RBP15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 IL12RB1P42701 662 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 ARID5AQ03989 594 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 ENPEPQ07075 957 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 SPOPLQ6IQ16 392 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 SCD5Q86SK9 330 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 CPXM2Q8N436 756 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 PNPLA1Q8N8W4 532 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 ELMO3Q96BJ8 720 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 FAXDC2Q96IV6 333 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 PIWIL1Q96J94 861 aaKnown RBP15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 NIF3L1Q9GZT8 377 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 TM7SF3Q9NS93 570 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 FOXD4L1Q9NU39 408 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 NUDT5Q9UKK9 219 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 PLXNB3Q9ULL4 1909 aa15.5■□□□□ 0.07
CCDC88B-201ENST00000301897 PTPRBP23467 1997 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 KLKB1P03952 638 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 VAMP7P51809 220 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 AFF3P51826 1226 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 SLC8A3P57103 927 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 ZNF445P59923 1031 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 PDE4CQ08493 712 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 STK4Q13043 487 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 ZNF234Q14588 700 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 GEN1Q17RS7 908 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 CEP135Q66GS9 1140 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 INTS8Q75QN2 995 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 RSRC2Q7L4I2 434 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 KIAA0895Q8NCT3 520 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 ENGASEQ8NFI3 743 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 UBXN6Q9BZV1 441 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 FBRSQ9HAH7 460 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 DKK4Q9UBT3 224 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 USP25Q9UHP3 1055 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 RASAL2Q9UJF2 1139 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 AGO1Q9UL18 857 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 PCDHA7Q9UN72 937 aa15.49■□□□□ 0.07
CCDC88B-201ENST00000301897 SMG1Q96Q15 3661 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 KCNJ18B7U540 433 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 KLRC4O43908 158 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 EPHX1P07099 455 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 KRT13P13646 458 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 COPAP53621 1224 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 EFEMP1Q12805 493 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 TEAD4Q15561 434 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 HLA-BQ31612 363 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 SERPINA13PQ6UXR4 307 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 DBX2Q6ZNG2 339 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 TMPRSS7Q7RTY8 843 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 SLCO6A1Q86UG4 719 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 PDZD3Q86UT5 571 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 GALNT15Q8N3T1 639 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 BAHD1Q8TBE0 780 aaPredicted RBP15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 RHBDD1Q8TEB9 315 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 DDI1Q8WTU0 396 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 PLD4Q96BZ4 506 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 TWNKQ96RR1 684 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 CIPCQ9C0C6 399 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 OSGEPQ9NPF4 335 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 OLA1Q9NTK5 396 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 MARCH2Q9P0N8 246 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 EIF2B4Q9UI10 523 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 CFAP45Q9UL16 551 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 TRAF3IP3Q9Y228 551 aa15.48■□□□□ 0.07
CCDC88B-201ENST00000301897 LOC400499M0QZD8 3231 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 HMBSP08397 361 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 CD58P19256 250 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms