RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 BEST2Q8NFU1 509 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 USP33Q8TEY7 942 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 ZNF483Q8TF39 744 aaPredicted RBP15.81■□□□□ 0.12
SHH-201ENST00000297261 USP6NLQ92738 828 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 UPF1Q92900 1129 aaKnown RBP eCLIP15.81■□□□□ 0.12
SHH-201ENST00000297261 LAMB2P55268 1798 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 C2orf71A6NGG8 1288 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 SAC3D1A6NKF1 404 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 CYP2C9P11712 490 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 MARSP56192 900 aaKnown RBP15.81■□□□□ 0.12
SHH-201ENST00000297261 GSTA3Q16772 222 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 MFSD5Q6N075 450 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 RBM44Q6ZP01 1051 aaKnown RBP15.81■□□□□ 0.12
SHH-201ENST00000297261 POLNQ7Z5Q5 900 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 ALYREFQ86V81 257 aaKnown RBP15.81■□□□□ 0.12
SHH-201ENST00000297261 PTPRN2Q92932 1015 aa15.81■□□□□ 0.12
SHH-201ENST00000297261 TSR3Q9UJK0 312 aaKnown RBP15.81■□□□□ 0.12
SHH-201ENST00000297261 WFS1O76024 890 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 MYCP01106 439 aaPredicted RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 ALADP13716 330 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 SLC1A6P48664 564 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 SLC26A2P50443 739 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 HIRAP54198 1017 aaPredicted RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 SEL1L3Q68CR1 1132 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 MICU2Q8IYU8 434 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 MAB21L3Q8N8X9 362 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 CLPTM1LQ96KA5 538 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 PORCNQ9H237 461 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 TCF7L2Q9NQB0 619 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 F8VP50 259 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 ZNF189O75820 626 aaPredicted RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 TPBGLP0DKB5 382 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 VAV1P15498 845 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 GPD1P21695 349 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 GRK2P25098 689 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 SLC1A5Q15758 541 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 PPP1R15BQ5SWA1 713 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 ITPRIPL1Q6GPH6 555 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 PALB2Q86YC2 1186 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 GSTCDQ8NEC7 633 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 UCMAQ8WVF2 138 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 CASP10Q92851 521 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 RMND5BQ96G75 393 aaPredicted RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 MMADHCQ9H3L0 296 aaPredicted RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 SARS2Q9NP81 518 aaKnown RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 KCNK4Q9NYG8 393 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 DOCK2Q92608 1830 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 GLRA2P23416 452 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 EIF2B2P49770 351 aaKnown RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 TMEM132DQ14C87 1099 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 TTC27Q6P3X3 843 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 C6orf89Q6UWU4 347 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 DHDDSQ86SQ9 333 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 PATL1Q86TB9 770 aaKnown RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 PLD3Q8IV08 490 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 ABRAQ8N0Z2 381 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 RFWD2Q8NHY2 731 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 VPS50Q96JG6 964 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 ZFRQ96KR1 1074 aaKnown RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 DCDC2Q9UHG0 476 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 MYH10P35580 1976 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 A0A087WZ62 844 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 H3BRB1 525 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 RPL5P46777 297 aaKnown RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 ZNF484Q5JVG2 852 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 GJC2Q5T442 439 aaPredicted RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 SNX32Q86XE0 403 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 SLC9A9Q8IVB4 645 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 REPS2Q8NFH8 660 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 FDXACB1Q9BRP7 624 aaPredicted RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 TUT1Q9H6E5 874 aaKnown RBP15.8■□□□□ 0.12
SHH-201ENST00000297261 NRDE2Q9H7Z3 1164 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 BLOC1S6Q9UL45 172 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 SLC12A4Q9UP95 1085 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 SNX9Q9Y5X1 595 aa15.8■□□□□ 0.12
SHH-201ENST00000297261 NCANO14594 1321 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 MAST2Q6P0Q8 1798 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ABLIM1O14639 778 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 DDX3YO15523 660 aaKnown RBP15.79■□□□□ 0.12
SHH-201ENST00000297261 HSPA1AP0DMV8 641 aaKnown RBP15.79■□□□□ 0.12
SHH-201ENST00000297261 HSPA1BP0DMV9 641 aaKnown RBP15.79■□□□□ 0.12
SHH-201ENST00000297261 ADCYAP1R1P41586 468 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ANGPTL8Q6UXH0 198 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ABHD15Q6UXT9 468 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 CYP2R1Q6VVX0 501 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ULK2Q8IYT8 1036 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 SH3TC2Q8TF17 1288 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 LZICQ8WZA0 190 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 FAM210AQ96ND0 272 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 NR1H4Q96RI1 486 aaPredicted RBP15.79■□□□□ 0.12
SHH-201ENST00000297261 NMUR2Q9GZQ4 415 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 SEMA6AQ9H2E6 1030 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 EML4Q9HC35 981 aaKnown RBP15.79■□□□□ 0.12
SHH-201ENST00000297261 ZFYVE28Q9HCC9 887 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 SLC17A7Q9P2U7 560 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 LYNP07948 512 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 NME5P56597 212 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 MPZL3Q6UWV2 235 aa15.79■□□□□ 0.12
SHH-201ENST00000297261 ZNF606Q8WXB4 792 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms