RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MECRQ9BV79 373 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 TSSK1BQ9BXA7 367 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 TXLNGQ9NUQ3 528 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 CREB3O43889 395 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 MAGEA6P43360 314 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 ACADSBP45954 432 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 SV2CQ496J9 727 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 AGAP11Q8TF27 550 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 UTP4Q969X6 686 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 NCAPGQ9BPX3 1015 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 IQCGQ9H095 443 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 FZD10Q9ULW2 581 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 USP3Q9Y6I4 520 aa18.98■□□□□ 0.63
SHKBP1-201ENST00000291842 C2orf71A6NGG8 1288 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 MFSD11O43934 449 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 T-ENOLP0DO92 83 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 KCNE1P15382 129 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 ZFXP17010 805 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 ARL4AP40617 200 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 RPL34P49207 117 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 MROH9Q5TGP6 573 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 SYPL2Q5VXT5 272 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 WSCD1Q658N2 575 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 TFB1MQ8WVM0 346 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 HTR3CQ8WXA8 447 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 TNIP3Q96KP6 325 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 HSFY1Q96LI6 401 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 FRMD8Q9BZ67 464 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 SEPT10Q9P0V9 454 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 SLC17A6Q9P2U8 582 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 KRT37O76014 449 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 SNRPAP09012 282 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 DHRS4L1P0CG22 281 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 ZNF865P0CJ78 1059 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 TROVE2P10155 538 aaKnown RBP eCLIP18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 PRKCHP24723 683 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 AXLP30530 894 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 PNPLA4P41247 253 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 NR2C2P49116 596 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 AP1B1Q10567 949 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 SLC25A52Q3SY17 297 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 EFHC1Q5JVL4 640 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 BSPRYQ5W0U4 402 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 CASC4Q6P4E1 433 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 HFE2Q6ZVN8 426 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 TP53INP2Q8IXH6 220 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 MCUQ8NE86 351 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 ADAM32Q8TC27 787 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 EBNA1BP2Q99848 306 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 MED10Q9BTT4 135 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 ARHGEF4Q9NR80 690 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 ZFP69BQ9UJL9 534 aa18.97■□□□□ 0.63
SHKBP1-201ENST00000291842 ZNF487B1APH4 448 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 CYB561D2O14569 222 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 XPO1O14980 1071 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 RARBP10826 455 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 SKIV2L2P42285 1042 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 MAGEA3P43357 314 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 SERPINB4P48594 390 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 AFF1P51825 1210 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 RIPK1Q13546 671 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 ANKRD20A2Q5SQ80 823 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 ANKRD20A1Q5TYW2 823 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 ANKRD20A3Q5VUR7 823 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 OTUD1Q5VV17 481 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 KIAA0319Q5VV43 1072 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 PAQR9Q6ZVX9 377 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 STRADAQ7RTN6 431 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 CTU1Q7Z7A3 348 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 DUSP16Q9BY84 665 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 TIMM13Q9Y5L4 95 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 ZNF638Q14966 1978 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 WDR27A2RRH5 827 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 M0QYT0 321 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 PTGESO14684 152 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 XPOTO43592 962 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 CELF2O95319 508 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 TOP3BO95985 862 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 CYP2B6P20813 491 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 SLC8A1P32418 973 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 MAP3K7CLP57077 242 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 XKR4Q5GH76 650 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 MDH1BQ5I0G3 518 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 PDCD7Q8N8D1 485 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 ARMC2Q8NEN0 867 aa18.96■□□□□ 0.63
SHKBP1-201ENST00000291842 PDCD11Q14690 1871 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 CCDC195A0A1B0GUA6 201 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 C2CD2LO14523 706 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 TRDMT1O14717 391 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 RFPL1O75677 317 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 DGKIO75912 1065 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 PTPN1P18031 435 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 MRPS5P82675 430 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 MAP2K5Q13163 448 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 PCBP1Q15365 356 aaKnown RBP eCLIP18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 ARCQ7LC44 396 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 NME8Q8N427 588 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 COLGALT1Q8NBJ5 622 aa18.95■□□□□ 0.62
SHKBP1-201ENST00000291842 CCNYQ8ND76 341 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms