RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PDE1BQ01064 536 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 FAM47CQ5HY64 1035 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 C9orf57Q5W0N0 161 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 GPR142Q7Z601 462 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 ARRDC4Q8NCT1 418 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 MIPEPQ99797 713 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 DENND2DQ9H6A0 471 aaPredicted RBP17.19■□□□□ 0.34
VPS54-201ENST00000272322 PLAC1Q9HBJ0 212 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 DOCK3Q8IZD9 2030 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 MFSD11O43934 449 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 SNRPAP09012 282 aaKnown RBP17.19■□□□□ 0.34
VPS54-201ENST00000272322 ELF1P32519 619 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 PTPN7P35236 360 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 GABRB2P47870 512 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 CCNA1P78396 465 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 CCL14Q16627 93 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 DGKDQ16760 1214 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 SLC27A1Q6PCB7 646 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 PNPLA1Q8N8W4 532 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 COLGALT1Q8NBJ5 622 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 STKLD1Q8NE28 680 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 HIPK4Q8NE63 616 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 VPS11Q9H270 941 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 NOP53Q9NZM5 478 aaKnown RBP17.19■□□□□ 0.34
VPS54-201ENST00000272322 C2CD2Q9Y426 696 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.19■□□□□ 0.34
VPS54-201ENST00000272322 MEI4A8MW99 385 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 H3BRJ5 948 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 ESRRAP11474 423 aaPredicted RBP17.19■□□□□ 0.34
VPS54-201ENST00000272322 VAV1P15498 845 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 DESP17661 470 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 PSMB4P28070 264 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 ARL4AP40617 200 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 CMC1Q7Z7K0 106 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 ZNF276Q8N554 614 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 POU5F2Q8N7G0 328 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 SLC7A14Q8TBB6 771 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 APOPT1Q96IL0 206 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 EBF4Q9BQW3 602 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 LRRC4Q9HBW1 653 aa17.19■□□□□ 0.34
VPS54-201ENST00000272322 E7ESA3 106 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 SMIM10L2AP0DMW4 78 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 SMIM10L2BP0DMW5 78 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 AQP5P55064 265 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 CCDC6Q16204 474 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 TNS4Q8IZW8 715 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 DNAAF3Q8N9W5 541 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 APPL2Q8NEU8 664 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 CELF6Q96J87 481 aaKnown RBP17.18■□□□□ 0.34
VPS54-201ENST00000272322 SLC5A4Q9NY91 659 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 KCNH4Q9UQ05 1017 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 EFR3BQ9Y2G0 817 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 FAM72CH0Y354 149 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 APOEP02649 317 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 AMHP03971 560 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 INCA1Q0VD86 236 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 PEX6Q13608 980 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 ZNF792Q3KQV3 632 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 FAM72AQ5TYM5 149 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 FAM72DQ6L9T8 149 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 FAM72BQ86X60 149 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 MICAL1Q8TDZ2 1067 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 BRI3BPQ8WY22 251 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 SIK2Q9H0K1 926 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 PACSIN3Q9UKS6 424 aa17.18■□□□□ 0.34
VPS54-201ENST00000272322 HUS1O60921 280 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 MRPS5P82675 430 aaKnown RBP17.17■□□□□ 0.34
VPS54-201ENST00000272322 KHDC1Q4VXA5 237 aaKnown RBP17.17■□□□□ 0.34
VPS54-201ENST00000272322 TTC39BQ5VTQ0 682 aaPredicted RBP17.17■□□□□ 0.34
VPS54-201ENST00000272322 PRDM12Q9H4Q4 367 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 MCM8Q9UJA3 840 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 TAF11Q15544 211 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 ANKRD20A2Q5SQ80 823 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 ANKRD20A1Q5TYW2 823 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 NOTUMQ6P988 496 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 SHKBP1Q8TBC3 707 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 TINF2Q9BSI4 451 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 C15orf41Q9Y2V0 281 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 FCHO1O14526 889 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 SRGAP2BP0DMP2 458 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 GRM5P41594 1212 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 UBAP2LQ14157 1087 aaKnown RBP17.17■□□□□ 0.34
VPS54-201ENST00000272322 TAZQ16635 292 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 OSTM1Q86WC4 334 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 ADGRF2Q8IZF7 708 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 KBTBD7Q8WVZ9 684 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 E2F7Q96AV8 911 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 RSRC1Q96IZ7 334 aaKnown RBP17.17■□□□□ 0.34
VPS54-201ENST00000272322 MAML3Q96JK9 1138 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 MTMR10Q9NXD2 777 aa17.17■□□□□ 0.34
VPS54-201ENST00000272322 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.17■□□□□ 0.348e-6■■■□□ 18.7
VPS54-201ENST00000272322 LOC100653049A0A140TA62 436 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 CASTOR2A6NHX0 329 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 RNF103O00237 685 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 KRT34O76011 436 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 PDK2Q15119 407 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 VWA5B1Q5TIE3 1220 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 RINLQ6ZS11 566 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 TMEM110Q86TL2 294 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 HTR3CQ8WXA8 447 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms