RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 NDST1P52848 882 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 OCRLQ01968 901 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TMEM132BQ14DG7 1078 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 CNGA3Q16281 694 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 ATF7IP2Q5U623 682 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 PDPK2PQ6A1A2 396 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 KCNT2Q6UVM3 1135 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 FAM183BPQ6ZVS7 135 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 XYLT1Q86Y38 959 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 MFN1Q8IWA4 741 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 BRSK2Q8IWQ3 736 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TRIM42Q8IWZ5 723 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 SLC16A10Q8TF71 515 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 COPS5Q92905 334 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 HIC2Q96JB3 615 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 NDNQ99608 321 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 EPAS1Q99814 870 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TMPRSS4Q9NRS4 437 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 KCNK4Q9NYG8 393 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 TSPAN16Q9UKR8 245 aa12.36□□□□□ -0.43
USHBP1-201ENST00000252597 OGTO15294 1046 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 STIP1P31948 543 aaKnown RBP12.35□□□□□ -0.43
USHBP1-201ENST00000252597 CXCL9Q07325 125 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 LAMTOR4Q0VGL1 99 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 LBRQ14739 615 aaKnown RBP12.35□□□□□ -0.43
USHBP1-201ENST00000252597 ABHD15Q6UXT9 468 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 RNF135Q8IUD6 432 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 RELL1Q8IUW5 271 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 PYROXD2Q8N2H3 581 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 LRGUKQ96M69 825 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 UBE2OQ9C0C9 1292 aaKnown RBP12.35□□□□□ -0.43
USHBP1-201ENST00000252597 ELOVL4Q9GZR5 314 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 SEMA6AQ9H2E6 1030 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 VCX3AQ9NNX9 186 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 PSAT1Q9Y617 370 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 DESP17661 470 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 EIF4BP23588 611 aaKnown RBP12.35□□□□□ -0.43
USHBP1-201ENST00000252597 ETV4P43268 484 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 RABGGTBP53611 331 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 NRF1Q16656 503 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 GOLGA7BQ2TAP0 167 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 PID1Q7Z2X4 250 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 ZNF276Q8N554 614 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 PLD5Q8N7P1 536 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 CDKL2Q92772 493 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 GPRASP2Q96D09 838 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 SDCBP2Q9H190 292 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 DEFB129Q9H1M3 183 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 COPS7BQ9H9Q2 264 aaPredicted RBP12.35□□□□□ -0.43
USHBP1-201ENST00000252597 PDP2Q9P2J9 529 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 TEX264Q9Y6I9 313 aa12.35□□□□□ -0.43
USHBP1-201ENST00000252597 CCNG1P51959 295 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 PDCD2Q16342 344 aaPredicted RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 LRRC38Q5VT99 294 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 NIPA1Q7RTP0 329 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 PIWIL2Q8TC59 973 aaKnown RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 CLEC4CQ8WTT0 213 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 FAM136AQ96C01 138 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 PRPF18Q99633 342 aaKnown RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 GORASP1Q9BQQ3 440 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 ACAD9Q9H845 621 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 MYOZ2Q9NPC6 264 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 ADA2Q9NZK5 511 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 RPS6KL1Q9Y6S9 549 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 PMM2O15305 246 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 HNRNPRO43390 633 aaKnown RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 CSPG5O95196 566 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 BPGMP07738 259 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 CD1EP15812 388 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 RPS6KA3P51812 740 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 TAP1Q03518 808 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 ILDR2Q71H61 639 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 DHDDSQ86SQ9 333 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 WDR49Q8IV35 697 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 ZNF398Q8TD17 642 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 LPAR1Q92633 364 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 PPWD1Q96BP3 646 aaKnown RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 HPDLQ96IR7 371 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 RNF157Q96PX1 679 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 SNRNP25Q9BV90 132 aaKnown RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 PIM2Q9P1W9 311 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 HESX1Q9UBX0 185 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 ADAMTS6Q9UKP5 1117 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 AFG3L2Q9Y4W6 797 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 CNTNAP1P78357 1384 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 QSER1Q2KHR3 1735 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 STX16-NPEPL1H3BU86 382 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 TRAFD1O14545 582 aaPredicted RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 TBC1D12O60347 775 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 SIN3BO75182 1162 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 RFPL1O75677 317 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 VTNP04004 478 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 SPATA31D3P0C874 917 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 CYP2F1P24903 491 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 EPHA3P29320 983 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 INHBEP58166 350 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 PRAMEP78395 509 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 IFRD2Q12894 506 aaPredicted RBP12.34□□□□□ -0.43
USHBP1-201ENST00000252597 MAP7Q14244 749 aa12.34□□□□□ -0.43
USHBP1-201ENST00000252597 LIN52Q52LA3 116 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms