RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MPOP05164 745 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 SLC8A1P32418 973 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 DBN1Q16643 649 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 PHC3Q8NDX5 983 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 SIKE1Q9BRV8 207 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 VPS11Q9H270 941 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 RNF186Q9NXI6 227 aa14.08□□□□□ -0.16
LDLR-201ENST00000252444 SYCE1LA8MT33 242 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 SYNCRIPO60506 623 aaKnown RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 GRAP2O75791 330 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 CCL5P13501 91 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 JAM2P57087 298 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 LRRC8EQ6NSJ5 796 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 PDGFDQ9GZP0 370 aaPredicted RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.07□□□□□ -0.16
LDLR-201ENST00000252444 C2CD2LO14523 706 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 BRAFP15056 766 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 CACNB2Q08289 660 aaPredicted RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 RSRC1Q96IZ7 334 aaKnown RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 KDM4CQ9H3R0 1056 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 IGKV6D-21A0A0A0MT36 114 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 VPS26AO75436 327 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 SOAT2O75908 522 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 FMO1Q01740 532 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 TTC31Q49AM3 519 aaPredicted RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 AGAP9Q5VTM2 703 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 NUDCD3Q8IVD9 361 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 CARNMT1Q8N4J0 409 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 HTR3CQ8WXA8 447 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 BSNDQ8WZ55 320 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 GDAP1L1Q96MZ0 367 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 PITPNM3Q9BZ71 974 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 ZYG11BQ9C0D3 744 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 ATXN3LQ9H3M9 355 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 TRABDQ9H4I3 376 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 NCKAP1Q9Y2A7 1128 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 MYH14Q7Z406 1995 aaKnown RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 BNIP3LO60238 219 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 PGAM1P18669 254 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 CST5P28325 142 aaPredicted RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 NDUFV1P49821 464 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 AMHR2Q16671 573 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 SHROOM1Q2M3G4 852 aaPredicted RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 PURBQ96QR8 312 aaKnown RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 PABPC3Q9H361 631 aaKnown RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 PNPLA8Q9NP80 782 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 NDFIP2Q9NV92 336 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 KLHL11Q9NVR0 708 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 UBA2Q9UBT2 640 aaPredicted RBP14.07□□□□□ -0.16
LDLR-201ENST00000252444 MYH8P13535 1937 aa14.07□□□□□ -0.16
LDLR-201ENST00000252444 SLCO1B7G3V0H7 640 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 ATMINO43313 823 aaPredicted RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 ADH1CP00326 375 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 SLC4A1P02730 911 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 FAM83EQ2M2I3 478 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 SLC25A52Q3SY17 297 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 ECHDC2Q86YB7 292 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 UHMK1Q8TAS1 419 aaKnown RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 CASKIN2Q8WXE0 1202 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 PLEKHA4Q9H4M7 779 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 TRUB2O95900 331 aaKnown RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 ATP1A2P50993 1020 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 DRG2P55039 364 aaKnown RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 SLC45A4Q5BKX6 768 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 TTC19Q6DKK2 380 aaPredicted RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 FBXO46Q6PJ61 603 aaPredicted RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 C20orf96Q9NUD7 363 aaPredicted RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 DNAJC25-GNG10A0A024R161 153 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 E5RJQ4 531 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 DNALI1O14645 258 aaPredicted RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 DNAJC6O75061 913 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 KDELR1P24390 212 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 RTL10Q7L3V2 364 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 TMA16Q96EY4 203 aaKnown RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 CRLS1Q9UJA2 301 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 STK25O00506 426 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 ARIH2O95376 493 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 RPN2P04844 631 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 PLEKP08567 350 aaPredicted RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 ANKRD20A4Q4UJ75 823 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 ANKRD20A8PQ5CZ79 823 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 ANKRD20A2Q5SQ80 823 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 ANKRD20A1Q5TYW2 823 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 PLEKHA7Q6IQ23 1121 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 SLC26A9Q7LBE3 791 aa14.06□□□□□ -0.16
LDLR-201ENST00000252444 ACSF2Q96CM8 615 aaPredicted RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 POLR1EQ9GZS1 481 aaKnown RBP14.06□□□□□ -0.16
LDLR-201ENST00000252444 KPNA5O15131 536 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 ITGAVP06756 1048 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 RBP1P09455 135 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 TARBP2Q15633 366 aaKnown RBP14.05□□□□□ -0.16
LDLR-201ENST00000252444 IMPG1Q17R60 797 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PDPK2PQ6A1A2 396 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 PTRHD1Q6GMV3 140 aaKnown RBP14.05□□□□□ -0.16
LDLR-201ENST00000252444 FAM71DQ8N9W8 422 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 IPMKQ8NFU5 416 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 NPLOC4Q8TAT6 608 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 RIPOR3Q96MK2 946 aa14.05□□□□□ -0.16
LDLR-201ENST00000252444 RIC8BQ9NVN3 520 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms