RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 LIMD1Q9UGP4 676 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TDRKHQ9Y2W6 561 aaKnown RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 KIF20BQ96Q89 1820 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TARSL2A2RTX5 802 aaKnown RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 FPGTO14772 594 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 AP5Z1O43299 807 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 HOXB2P14652 356 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TIE1P35590 1138 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 SERPINB10P48595 397 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 PSMD7P51665 324 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 RABGGTBP53611 331 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 LPAL2Q16609 132 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 SPDYAQ5MJ70 313 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ARMC12Q5T9G4 340 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ATCAYQ86WG3 371 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 FAM129CQ86XR2 697 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 RBBP8NLQ8NC74 664 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GPR152Q8TDT2 470 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 DENND1AQ8TEH3 1009 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 BCAS3Q9H6U6 928 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 BCL2L12Q9HB09 334 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 DDX4Q9NQI0 724 aaKnown RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 CFAP97Q9P2B7 532 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 DNAI1Q9UI46 699 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 CABIN1Q9Y6J0 2220 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 C5orf58C9J3I9 102 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TBL1XO60907 577 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ITGB6P18564 788 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 OXTRP30559 389 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 RHBDL3P58872 404 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GPC5P78333 572 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 HP1BP3Q5SSJ5 553 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TMCO4Q5TGY1 634 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 RNF43Q68DV7 783 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 FAM173BQ6P4H8 233 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 VITQ6UXI7 678 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 OSBPL3Q9H4L5 887 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ACTR5Q9H9F9 607 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GTF2IRD1Q9UHL9 959 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 SIT1Q9Y3P8 196 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 CHD2O14647 1828 aaKnown RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 RP1P56715 2156 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 A0A0B4J269 797 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ATP9BO43861 1147 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 OPHN1O60890 802 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ALPPP05187 535 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 CXCL8P10145 99 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 AP2B1P63010 937 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ZBED6P86452 979 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GHRHRQ02643 423 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ELP6Q0PNE2 266 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 TUBB3Q13509 450 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 UGP2Q16851 508 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 GLE1Q53GS7 698 aaKnown RBP5.18□□□□□ -1.58
SCN1A-218ENST00000640036 BSNDQ8WZ55 320 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 AGAP3Q96P47 875 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 CRTAC1Q9NQ79 661 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 AHSPQ9NZD4 102 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 DCDC2Q9UHG0 476 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 ATP6V1HQ9UI12 483 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 PCDHGA4Q9Y5G9 962 aa5.18□□□□□ -1.58
SCN1A-218ENST00000640036 BCL9LQ86UU0 1499 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 SPTBN2O15020 2390 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 MSH4O15457 936 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 TROVE2P10155 538 aaKnown RBP eCLIP5.17□□□□□ -1.58
SCN1A-218ENST00000640036 PSMD8P48556 350 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 RWDD2BP57060 319 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 RBPJQ06330 500 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 BST2Q10589 180 aaKnown RBP5.17□□□□□ -1.58
SCN1A-218ENST00000640036 NAA25Q14CX7 972 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 FBXO43Q4G163 708 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 ZCCHC8Q6NZY4 707 aaKnown RBP5.17□□□□□ -1.58
SCN1A-218ENST00000640036 PHC3Q8NDX5 983 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 ST13P5Q8NFI4 369 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-218ENST00000640036 MCCC2Q9HCC0 563 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 PDE11AQ9HCR9 933 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 PDGFCQ9NRA1 345 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 MRPS33Q9Y291 106 aaKnown RBP5.17□□□□□ -1.58
SCN1A-218ENST00000640036 CACNA1FO60840 1977 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 CEMIPQ8WUJ3 1361 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 CACNA1BQ00975 2339 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 TLR5O60602 858 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 MTRF1O75570 445 aaKnown RBP5.17□□□□□ -1.58
SCN1A-218ENST00000640036 SERPING1P05155 500 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 MSH2P43246 934 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 RFX3P48380 749 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 ST13P50502 369 aaKnown RBP5.17□□□□□ -1.58
SCN1A-218ENST00000640036 ROR1Q01973 937 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 POM121L1PQ3SYA9 428 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 TTI2Q6NXR4 508 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 MMS22LQ6ZRQ5 1243 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 LINC00523Q86TU6 105 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 ZFPM1Q8IX07 1006 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 KIRREL3Q8IZU9 778 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 MKL1Q969V6 931 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 TTC17Q96AE7 1141 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 NAPGQ99747 312 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-218ENST00000640036 BRD8Q9H0E9 1235 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 CDH7Q9ULB5 785 aa5.17□□□□□ -1.58
SCN1A-218ENST00000640036 ZFP37Q9Y6Q3 630 aaPredicted RBP5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms