RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 P2RY11Q96G91 374 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 TOE1Q96GM8 510 aaKnown RBP20.43■□□□□ 0.86
CLN3-262ENST00000637699 GPR174Q9BXC1 333 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 PRDM16Q9HAZ2 1276 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLN3-262ENST00000637699 DMAC2Q9NW81 257 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 NAGPAQ9UK23 515 aa20.43■□□□□ 0.86
CLN3-262ENST00000637699 LAMA5O15230 3695 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 FTH1P19P0C7X4 201 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 ASPAP45381 313 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 FOXD4L6Q3SYB3 417 aaPredicted RBP20.42■□□□□ 0.86
CLN3-262ENST00000637699 ZACNQ401N2 412 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 FOXD4L3Q6VB84 417 aaPredicted RBP20.42■□□□□ 0.86
CLN3-262ENST00000637699 SV2AQ7L0J3 742 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 ADAMTS14Q8WXS8 1223 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 TAF4BQ92750 862 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 CYFIP2Q96F07 1278 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 TWNKQ96RR1 684 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 HNRNPABQ99729 332 aaKnown RBP20.42■□□□□ 0.86
CLN3-262ENST00000637699 MKRN2Q9H000 416 aaKnown RBP20.42■□□□□ 0.86
CLN3-262ENST00000637699 MIR1-1HGQ9H1L0 117 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 WSB2Q9NYS7 404 aaPredicted RBP20.42■□□□□ 0.86
CLN3-262ENST00000637699 FBXO10Q9UK96 956 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 PCDHA5Q9Y5H7 936 aa20.42■□□□□ 0.86
CLN3-262ENST00000637699 STC2O76061 302 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 KIF20AO95235 890 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 ASS1P00966 412 aaKnown RBP20.41■□□□□ 0.86
CLN3-262ENST00000637699 NCAM1P13591 858 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 TRIM21P19474 475 aaKnown RBP20.41■□□□□ 0.86
CLN3-262ENST00000637699 PIK3CAP42336 1068 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 STK4Q13043 487 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 GEN1Q17RS7 908 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 KLHDC10Q6PID8 442 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 C19orf48Q6RUI8 117 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 ZCCHC9Q8N567 271 aaKnown RBP20.41■□□□□ 0.86
CLN3-262ENST00000637699 DNASE2BQ8WZ79 361 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 ZDHHC5Q9C0B5 715 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 ITM2CQ9NQX7 267 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 FAM13BQ9NYF5 915 aa20.41■□□□□ 0.86
CLN3-262ENST00000637699 A0A1B0GTW7 788 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 KCNJ18B7U540 433 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 HLA-DRAP01903 254 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 KLKB1P03952 638 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 HMBSP08397 361 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 IL12RB1P42701 662 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 MFAP3P55082 362 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 CEP135Q66GS9 1140 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 SCD5Q86SK9 330 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 METTL3Q86U44 580 aaKnown RBP20.4■□□□□ 0.86
CLN3-262ENST00000637699 SLC9A9Q8IVB4 645 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 KIAA0895Q8NCT3 520 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 SETD7Q8WTS6 366 aaKnown RBP20.4■□□□□ 0.86
CLN3-262ENST00000637699 IL21RQ9HBE5 538 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 USP36Q9P275 1121 aaKnown RBP20.4■□□□□ 0.86
CLN3-262ENST00000637699 SLC27A6Q9Y2P4 619 aa20.4■□□□□ 0.86
CLN3-262ENST00000637699 KLRC4O43908 158 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 SYNCRIPO60506 623 aaKnown RBP20.39■□□□□ 0.85
CLN3-262ENST00000637699 NR3C1P04150 777 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 TPMTP51580 245 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 KIF11P52732 1056 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 DCAF12L1Q5VU92 463 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 FYB2Q5VWT5 728 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 TADA2BQ86TJ2 420 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 SLCO6A1Q86UG4 719 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 TMPRSS6Q8IU80 811 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 TMC2Q8TDI7 906 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 NT5C1AQ9BXI3 368 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 EXOC1Q9NV70 894 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 THAP10Q9P2Z0 257 aaPredicted RBP20.39■□□□□ 0.85
CLN3-262ENST00000637699 SERTAD1Q9UHV2 236 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 RASAL2Q9UJF2 1139 aa20.39■□□□□ 0.85
CLN3-262ENST00000637699 APOBEC2Q9Y235 224 aaKnown RBP20.39■□□□□ 0.85
CLN3-262ENST00000637699 PENKP01210 267 aaPredicted RBP20.38■□□□□ 0.85
CLN3-262ENST00000637699 RALAP11233 206 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 CD58P19256 250 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 CHKAP35790 457 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 ME1P48163 572 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 PSEN1P49768 467 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 INCA1Q0VD86 236 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 C1orf220Q5T0J3 134 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 CCNI2Q6ZMN8 369 aaPredicted RBP20.38■□□□□ 0.85
CLN3-262ENST00000637699 CACUL1Q86Y37 369 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 CEP57L1Q8IYX8 460 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 CADM4Q8NFZ8 388 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 UCMAQ8WVF2 138 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 SIPA1Q96FS4 1042 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 KCTD10Q9H3F6 313 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 CCDC86Q9H6F5 360 aaKnown RBP20.38■□□□□ 0.85
CLN3-262ENST00000637699 GAREM1Q9H706 876 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 PNPLA8Q9NP80 782 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 PCOLCE2Q9UKZ9 415 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 PCDHA7Q9UN72 937 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 ZNF510Q9Y2H8 683 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 GPSM3Q9Y4H4 160 aa20.38■□□□□ 0.85
CLN3-262ENST00000637699 ADAMTS20P59510 1910 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 K7ELQ4 463 aaPredicted RBP20.37■□□□□ 0.85
CLN3-262ENST00000637699 IKBKBO14920 756 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 CBFA2T3O75081 653 aa20.37■□□□□ 0.85
CLN3-262ENST00000637699 CORO1AP31146 461 aaKnown RBP20.37■□□□□ 0.85
CLN3-262ENST00000637699 ZNF132P52740 706 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms