RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 HMX2A2RU54 273 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 I3L4J1 428 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 RARBP10826 455 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 SLC10A2Q12908 348 aaPredicted RBP13.22□□□□□ -0.29
LINC00540-203ENST00000631321 STEAP4Q687X5 459 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 RFWD3Q6PCD5 774 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 SLC26A9Q7LBE3 791 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 NLRP7Q8WX94 980 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 MTMR10Q9NXD2 777 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 PCDHA11Q9Y5I1 949 aa13.22□□□□□ -0.29
LINC00540-203ENST00000631321 FAM237BA0A1B0GVD1 139 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 CAPN14A8MX76 684 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 BIRC5O15392 142 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 UGT1A9O60656 530 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 SNNO75324 88 aaPredicted RBP13.21□□□□□ -0.29
LINC00540-203ENST00000631321 ATP5BP06576 529 aaKnown RBP13.21□□□□□ -0.29
LINC00540-203ENST00000631321 GBE1Q04446 702 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 BST1Q10588 318 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 BLMHQ13867 455 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 ZBTB6Q15916 424 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 DBN1Q16643 649 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 FAM182AQ5T1J6 154 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 CES4AQ5XG92 561 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 ZNF410Q86VK4 478 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 SULF1Q8IWU6 871 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 LRRC52Q8N7C0 313 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 E2F7Q96AV8 911 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 SGIP1Q9BQI5 828 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 C16orf70Q9BSU1 422 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 UGT1A7Q9HAW7 530 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 UGT1A10Q9HAW8 530 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 UGT1A8Q9HAW9 530 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 ARHGEF4Q9NR80 690 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 TAS2R1Q9NYW7 299 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 MOCS1Q9NZB8 636 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 EVPLQ92817 2033 aa13.21□□□□□ -0.29
LINC00540-203ENST00000631321 GYG2O15488 501 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 ECM2O94769 699 aaPredicted RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 TFE3P19532 575 aaPredicted RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 CNTFP26441 200 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 PTDSS1P48651 473 aaKnown RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 KHDC1Q4VXA5 237 aaKnown RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 PPP6R3Q5H9R7 873 aaPredicted RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 GJC2Q5T442 439 aaPredicted RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 STXBP5Q5T5C0 1151 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 TRMT10BQ6PF06 316 aaKnown RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 DSTYKQ6XUX3 929 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 RINLQ6ZS11 566 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 TTC7BQ86TV6 843 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 ANKRD13AQ8IZ07 590 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 TEX9Q8N6V9 391 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 ARMC2Q8NEN0 867 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 DCPSQ96C86 337 aaKnown RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 B3GNT5Q9BYG0 378 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 GCOM2Q9BZD3 368 aaPredicted RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 NMUR2Q9GZQ4 415 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 FAM49BQ9NUQ9 324 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 SNX9Q9Y5X1 595 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 PLXNA1Q9UIW2 1896 aa13.21□□□□□ -0.3
LINC00540-203ENST00000631321 POLR2AP24928 1970 aaKnown RBP13.21□□□□□ -0.3
LINC00540-203ENST00000631321 PPEF2O14830 753 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 ALDH1A2O94788 518 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 MAP3K6O95382 1288 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 BPGMP07738 259 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 ESRRAP11474 423 aaPredicted RBP13.2□□□□□ -0.3
LINC00540-203ENST00000631321 BMPR2Q13873 1038 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 FASTKD5Q7L8L6 764 aaKnown RBP13.2□□□□□ -0.3
LINC00540-203ENST00000631321 KIRREL3Q8IZU9 778 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 MPP5Q8N3R9 675 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 SNX27Q96L92 541 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 ZMAT2Q96NC0 199 aaKnown RBP13.2□□□□□ -0.3
LINC00540-203ENST00000631321 CSPG4P5Q96PW8 444 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 KCTD15Q96SI1 283 aaPredicted RBP13.2□□□□□ -0.3
LINC00540-203ENST00000631321 MECRQ9BV79 373 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 VTA1Q9NP79 307 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 ADARB2Q9NS39 739 aaKnown RBP13.2□□□□□ -0.3
LINC00540-203ENST00000631321 USP3Q9Y6I4 520 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 C2orf71A6NGG8 1288 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 A6NJR5 290 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 HACD1B0YJ81 288 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 DGKIO75912 1065 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 CYP2C8P10632 490 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 MLNP12872 115 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 ATP6V1C1P21283 382 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 ABL2P42684 1182 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 TMPRSS15P98073 1019 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 CHI3L2Q15782 390 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 MARCH8Q5T0T0 291 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 KCNT2Q6UVM3 1135 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 NUDCD3Q8IVD9 361 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 ANKRD52Q8NB46 1076 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 OLFM3Q96PB7 478 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 DHX35Q9H5Z1 703 aaKnown RBP13.2□□□□□ -0.3
LINC00540-203ENST00000631321 PRDM16Q9HAZ2 1276 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 AP4E1Q9UPM8 1137 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 MAD1L1Q9Y6D9 718 aa13.2□□□□□ -0.3
LINC00540-203ENST00000631321 MCM3APO60318 1980 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 CAPN15O75808 1086 aa13.19□□□□□ -0.3
LINC00540-203ENST00000631321 SMNDC1O75940 238 aaKnown RBP eCLIP13.19□□□□□ -0.3
LINC00540-203ENST00000631321 ZNF286BP0CG31 522 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms