RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 UBA2Q9UBT2 640 aaPredicted RBP9.16□□□□□ -0.94
VCL-206ENST00000623461 ACOT9Q9Y305 439 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 ALKQ9UM73 1620 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 IGSF9BQ9UPX0 1349 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 C5orf60A6NFR6 353 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 TRIM38O00635 465 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 KIZQ2M2Z5 673 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 WDR72Q3MJ13 1102 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 C16orf86Q6ZW13 317 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 IKBIPQ70UQ0 350 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 SZRD1Q7Z422 152 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 CPNE1Q99829 537 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 SUGT1Q9Y2Z0 365 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 RWDD3Q9Y3V2 267 aa9.16□□□□□ -0.94
VCL-206ENST00000623461 ZNF335Q9H4Z2 1342 aaPredicted RBP9.16□□□□□ -0.94
VCL-206ENST00000623461 KLHL33A6NCF5 533 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 IMPDH2P12268 514 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 COX4I1P13073 169 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 SOX11P35716 441 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 GP5P40197 560 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 ZNF235Q14590 738 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 DGKDQ16760 1214 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 ATAD3BQ5T9A4 648 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 ZNF772Q68DY9 489 aaPredicted RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 LMCD1Q9NZU5 365 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 BCS1LQ9Y276 419 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 NDUFAF1Q9Y375 327 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 LINC00854A0A1B0GVQ3 168 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 AGPSO00116 658 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 CD3EAPO15446 510 aaKnown RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 ATP6V1G1O75348 118 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 LTKP29376 864 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 RRM2P31350 389 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 POU4F1Q01851 419 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 FAAP100Q0VG06 881 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 MTM1Q13496 603 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 PPP1R15BQ5SWA1 713 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 CIAPIN1Q6FI81 312 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 OTUD5Q96G74 571 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 FAM84BQ96KN1 310 aaPredicted RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 INPP4AQ96PE3 977 aaPredicted RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 PPP1R10Q96QC0 940 aaKnown RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 RGSL1A5PLK6 1076 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 DDHD2O94830 711 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 SEC24AO95486 1093 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 PTPN7P35236 360 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 MAGEA10P43363 369 aaPredicted RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 RGS4P49798 205 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 NRF1Q16656 503 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 MCOLN2Q8IZK6 566 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 POC5Q8NA72 575 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 HPS1Q92902 700 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 SPRTNQ9H040 489 aaPredicted RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 SLC12A4Q9UP95 1085 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 AAR2Q9Y312 384 aaKnown RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 ADGRA2Q96PE1 1338 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 PRPF4O43172 522 aaKnown RBP eCLIP9.15□□□□□ -0.94
VCL-206ENST00000623461 S100A9P06702 114 aaKnown RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 RRM1P23921 792 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 ACOT2P49753 483 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 USP46P62068 366 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 ATP6AP1LQ52LC2 224 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 XKR3Q5GH77 459 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 SPANXN3Q5MJ09 141 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 UGT3A1Q6NUS8 523 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 CATSPER4Q7RTX7 472 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 ZDHHC13Q8IUH4 622 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 RP9Q8TA86 221 aaKnown RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 TUBGCP5Q96RT8 1024 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 POLR1BQ9H9Y6 1135 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 PSMD13Q9UNM6 376 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 DRG1Q9Y295 367 aaKnown RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 KDM6AO15550 1401 aaPredicted RBP9.15□□□□□ -0.94
VCL-206ENST00000623461 GRIK1P39086 918 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 CASP5P51878 434 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 GEMP55040 296 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 FOXR2Q6PJQ5 311 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 PIGWQ7Z7B1 504 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 TTC30AQ86WT1 665 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 KATNAL2Q8IYT4 538 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 SNX31Q8N9S9 440 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 UBASH3BQ8TF42 649 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 ARHGEF3Q9NR81 526 aa9.15□□□□□ -0.94
VCL-206ENST00000623461 INPP4BO15327 924 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 AKAP3O75969 853 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 HIST1H2AGP0C0S8 130 aaPredicted RBP9.15□□□□□ -0.95
VCL-206ENST00000623461 HIST1H2ADP20671 130 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 SSTR1P30872 391 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 CCT3P49368 545 aaKnown RBP9.15□□□□□ -0.95
VCL-206ENST00000623461 CASP4P49662 377 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 SLC25A3Q00325 362 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 TNK2Q07912 1038 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 COX10Q12887 443 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 GADL1Q6ZQY3 521 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 RASGEF1CQ8N431 466 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 SLC20A1Q8WUM9 679 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 HIST1H2AHQ96KK5 128 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 HIST1H2AJQ99878 128 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 H2AFJQ9BTM1 129 aa9.15□□□□□ -0.95
VCL-206ENST00000623461 FAM237BA0A1B0GVD1 139 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms