RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 EXOC2Q96KP1 924 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 CDC42EP4Q9H3Q1 356 aaKnown RBP10.94□□□□□ -0.66
VPS11-208ENST00000621676 CCSER2Q9H7U1 834 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 GDF3Q9NR23 364 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 GMIPQ9P107 970 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 NEU2Q9Y3R4 380 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 LTFP02788 710 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 PCSK1P29120 753 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 ARL4AP40617 200 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 PNPLA4P41247 253 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 SLC1A1P43005 524 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 TAF10Q12962 218 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 DPYSL3Q14195 570 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 ZDHHC24Q6UX98 284 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 SLC39A5Q6ZMH5 540 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 KCTD15Q96SI1 283 aaPredicted RBP10.94□□□□□ -0.66
VPS11-208ENST00000621676 SPON2Q9BUD6 331 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 PCDH18Q9HCL0 1135 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 OSER1Q9NX31 292 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 GRHL1Q9NZI5 618 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 MTRF1LQ9UGC7 380 aaKnown RBP10.94□□□□□ -0.66
VPS11-208ENST00000621676 LCMT1Q9UIC8 334 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 TMEM59LQ9UK28 342 aa10.94□□□□□ -0.66
VPS11-208ENST00000621676 ARID2Q68CP9 1835 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 MOXD2PA6NHM9 499 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 FSCN2O14926 492 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 FAM155BO75949 473 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 KRT7P08729 469 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 IRAK1P51617 712 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 TMED2Q15363 201 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 TRIM71Q2Q1W2 868 aaKnown RBP10.93□□□□□ -0.66
VPS11-208ENST00000621676 MSS51Q4VC12 460 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 C16orf59Q7L2K0 433 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 SRRM1Q8IYB3 904 aaKnown RBP10.93□□□□□ -0.66
VPS11-208ENST00000621676 EXD1Q8NHP7 514 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 MYCBPAPQ8TBZ2 947 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 CASP10Q92851 521 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 PABPC5Q96DU9 382 aaKnown RBP10.93□□□□□ -0.66
VPS11-208ENST00000621676 MCRS1Q96EZ8 462 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 RBM41Q96IZ5 413 aaKnown RBP10.93□□□□□ -0.66
VPS11-208ENST00000621676 LHX5Q9H2C1 402 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 ADAM28Q9UKQ2 775 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 CCL22O00626 93 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 LIASO43766 372 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 PIRTP0C851 137 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 RPL22P35268 128 aaKnown RBP10.93□□□□□ -0.66
VPS11-208ENST00000621676 SEMG2Q02383 582 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 BFSP2Q13515 415 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 DUPD1Q68J44 220 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 TAC4Q86UU9 113 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 KLHL5Q96PQ7 755 aa10.93□□□□□ -0.66
VPS11-208ENST00000621676 TSR3Q9UJK0 312 aaKnown RBP10.93□□□□□ -0.66
VPS11-208ENST00000621676 A8MX80 341 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 PRRG1O14668 218 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 GJB3O75712 270 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 FYNP06241 537 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 ANXA13P27216 316 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 CBX2Q14781 532 aaPredicted RBP10.92□□□□□ -0.66
VPS11-208ENST00000621676 KYAT1Q16773 422 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 ANKRD20A8PQ5CZ79 823 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 ERMARDQ5T6L9 678 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 FUT10Q6P4F1 479 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 TMC7Q7Z402 723 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 TMC3Q7Z5M5 1100 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 C7orf61Q8IZ16 206 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 PLD5Q8N7P1 536 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 PDCD7Q8N8D1 485 aaKnown RBP10.92□□□□□ -0.66
VPS11-208ENST00000621676 DPF3Q92784 378 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 FBXO32Q969P5 355 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 TMEM106CQ9BVX2 250 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 OR12D3Q9UGF7 316 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 TCRBV5S1A1TA0A578 114 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 EEF2KO00418 725 aaKnown RBP10.92□□□□□ -0.66
VPS11-208ENST00000621676 APOL1O14791 398 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 MFSD11O43934 449 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 MYZAPP0CAP1 466 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 LHX1P48742 406 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 KCNQ1P51787 676 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 GNGT1P63211 74 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 GRIK3Q13003 919 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 IRF5Q13568 498 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 ARHGEF6Q15052 776 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 PPP1R15BQ5SWA1 713 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 CD300LGQ6UXG3 332 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 TMEM110Q86TL2 294 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 UPF3AQ9H1J1 476 aaKnown RBP10.92□□□□□ -0.66
VPS11-208ENST00000621676 PRDM12Q9H4Q4 367 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 RSPH14Q9UHP6 348 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 SLC12A8A0AV02 714 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 MAP2K7O14733 419 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 GALTP07902 379 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 DESP17661 470 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 KRT15P19012 456 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 TPI1P60174 286 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 POU5F1Q01860 360 aaKnown RBP10.92□□□□□ -0.66
VPS11-208ENST00000621676 ROR1Q01973 937 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 PLD1Q13393 1074 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 NOMO1Q15155 1222 aa10.92□□□□□ -0.66
VPS11-208ENST00000621676 INTS6LQ5JSJ4 861 aaKnown RBP10.92□□□□□ -0.66
VPS11-208ENST00000621676 FNBP1LQ5T0N5 605 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms