RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 LRRC34Q8IZ02 419 aa22.08■■□□□ 1.13
LIME1-210ENST00000621325 PDIK1LQ8N165 341 aa22.08■■□□□ 1.13
LIME1-210ENST00000621325 NETO2Q8NC67 525 aa22.08■■□□□ 1.13
LIME1-210ENST00000621325 ZMIZ2Q8NF64 920 aa22.08■■□□□ 1.13
LIME1-210ENST00000621325 CCDC110Q8TBZ0 833 aa22.08■■□□□ 1.13
LIME1-210ENST00000621325 HASPINQ8TF76 798 aa22.08■■□□□ 1.13
LIME1-210ENST00000621325 SLC24A3Q9HC58 644 aa22.08■■□□□ 1.13
LIME1-210ENST00000621325 NR2E3Q9Y5X4 410 aa22.08■■□□□ 1.13
LIME1-210ENST00000621325 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP22.08■■□□□ 1.12
LIME1-210ENST00000621325 AP1G2O75843 785 aa22.08■■□□□ 1.12
LIME1-210ENST00000621325 RNASELQ05823 741 aaKnown RBP22.08■■□□□ 1.12
LIME1-210ENST00000621325 C3orf62Q6ZUJ4 267 aa22.08■■□□□ 1.12
LIME1-210ENST00000621325 RTP4Q96DX8 246 aa22.08■■□□□ 1.12
LIME1-210ENST00000621325 ADAM2Q99965 735 aa22.08■■□□□ 1.12
LIME1-210ENST00000621325 ULBP1Q9BZM6 244 aa22.08■■□□□ 1.12
LIME1-210ENST00000621325 KIF9Q9HAQ2 790 aa22.08■■□□□ 1.12
LIME1-210ENST00000621325 RABGEF1Q9UJ41 708 aa22.08■■□□□ 1.12
LIME1-210ENST00000621325 CHMP2BQ9UQN3 213 aa22.08■■□□□ 1.12
LIME1-210ENST00000621325 BCLAF3A2AJT9 711 aaKnown RBP22.07■■□□□ 1.12
LIME1-210ENST00000621325 FYNP06241 537 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 FAM163BP0C2L3 166 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 RDXP35241 583 aaKnown RBP22.07■■□□□ 1.12
LIME1-210ENST00000621325 LHX1P48742 406 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 PKN2Q16513 984 aaKnown RBP22.07■■□□□ 1.12
LIME1-210ENST00000621325 NAIF1Q69YI7 327 aaPredicted RBP22.07■■□□□ 1.12
LIME1-210ENST00000621325 TMEM86AQ8N2M4 240 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 SEC16BQ96JE7 1060 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 NPY6RQ99463 290 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 RTP3Q9BQQ7 232 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 FZD10Q9ULW2 581 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 INPP5FQ9Y2H2 1132 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 USP3Q9Y6I4 520 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 ZNF487B1APH4 448 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 M0QYT0 321 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 BRCC3P46736 316 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 NME3Q13232 169 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 DSC3Q14574 896 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 NCBP2-AS2Q69YL0 99 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 AGGF1Q8N302 714 aaeCLIP22.07■■□□□ 1.12
LIME1-210ENST00000621325 ATP11CQ8NB49 1132 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 ADAM32Q8TC27 787 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 NT5C3BQ969T7 300 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 MIEF2Q96C03 454 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 PAK5Q9P286 719 aa22.07■■□□□ 1.12
LIME1-210ENST00000621325 YJEFN3A6XGL0 299 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 E7ENQ6 273 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 ZNF623O75123 536 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 NOS2P35228 1153 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 TRABD2AQ86V40 505 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 TDRPQ86YL5 185 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 RIBC1Q8N443 379 aaPredicted RBP22.06■■□□□ 1.12
LIME1-210ENST00000621325 GDAP1Q8TB36 358 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 FBF1Q8TES7 1133 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 PHACTR1Q9C0D0 580 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 CCDC134Q9H6E4 229 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 A0A0U1RQF3 1178 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 B3GAT3O94766 335 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 ELK3P41970 407 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 IFT88Q13099 833 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 KCNT2Q6UVM3 1135 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 TAX1BP1Q86VP1 789 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 DYDC1Q8WWB3 177 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 SLC2A13Q96QE2 648 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 PIGVQ9NUD9 493 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 DTLQ9NZJ0 730 aa22.06■■□□□ 1.12
LIME1-210ENST00000621325 F8W810 466 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 RPL9P32969 192 aaKnown RBP22.05■■□□□ 1.12
LIME1-210ENST00000621325 ITGA7Q13683 1181 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 CD300LGQ6UXG3 332 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 BNIPLQ7Z465 357 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 PALM2Q8IXS6 379 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 NOD1Q9Y239 953 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 CFAP69A5D8W1 941 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 CHADO15335 359 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 SPAG7O75391 227 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 VIMP08670 466 aaKnown RBP22.05■■□□□ 1.12
LIME1-210ENST00000621325 USP17L7P0C7H9 530 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 SLC45A4Q5BKX6 768 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 EFHC2Q5JST6 749 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 C6orf89Q6UWU4 347 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 ETNK1Q9HBU6 452 aa22.05■■□□□ 1.12
LIME1-210ENST00000621325 SMAPO00193 183 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 NEBLO76041 1014 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 METTL18O95568 372 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 ALDH1A1P00352 501 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 AMHP03971 560 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 TRIM71Q2Q1W2 868 aaKnown RBP22.04■■□□□ 1.12
LIME1-210ENST00000621325 POPDC2Q9HBU9 364 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 ARHGEF4Q9NR80 690 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 CDH9Q9ULB4 789 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 A0A1W2PPM1 405 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 ITGB1P05556 798 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 APRTP07741 180 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 KRT15P19012 456 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 PAX7P23759 505 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 CST5P28325 142 aaPredicted RBP22.04■■□□□ 1.12
LIME1-210ENST00000621325 DAOAP59103 153 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 SP3Q02447 781 aa22.04■■□□□ 1.12
LIME1-210ENST00000621325 GKAP1Q5VSY0 366 aaPredicted RBP22.04■■□□□ 1.12
LIME1-210ENST00000621325 CDKL3Q8IVW4 592 aaPredicted RBP22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms