RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 VTA1Q9NP79 307 aa15.01□□□□□ -0.01
SHROOM1-208ENST00000617339 ASNSD1Q9NWL6 643 aa15.01□□□□□ -0.01
SHROOM1-208ENST00000617339 IL1RAPL1Q9NZN1 696 aa15.01□□□□□ -0.01
SHROOM1-208ENST00000617339 ASB3Q9Y575 518 aa15.01□□□□□ -0.01
SHROOM1-208ENST00000617339 KRT7P08729 469 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 ZBTB16Q05516 673 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 PARP6Q2NL67 630 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 FBXO36Q8NEA4 188 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 NRG4Q8WWG1 115 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 AGAP3Q96P47 875 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 RHOBTB2Q9BYZ6 727 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 KIF13BQ9NQT8 1826 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 MYADML2A6NDP7 307 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 FAM47DPA6NHR8 397 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 FAM155BO75949 473 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 POMCP01189 267 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 RBL1P28749 1068 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 SOX4Q06945 474 aaPredicted RBP15□□□□□ -0.01
SHROOM1-208ENST00000617339 MFSD10Q14728 455 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 LBRQ14739 615 aaKnown RBP15□□□□□ -0.01
SHROOM1-208ENST00000617339 TNFAIP8L3Q5GJ75 292 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 HHATQ5VTY9 493 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 OR52E8Q6IFG1 317 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 ITFG2Q969R8 447 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 GAD1Q99259 594 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 LMCD1Q9NZU5 365 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 MYO7AQ13402 2215 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 FGFR1P11362 822 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 VDRP11473 427 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 GSTT1P30711 240 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 RGS2P41220 211 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 FLT3LGP49771 235 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 PPFIBP2Q8ND30 876 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 BEST2Q8NFU1 509 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 ARHGAP39Q9C0H5 1083 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 DCLRE1BQ9H816 532 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 NME7Q9Y5B8 376 aa15□□□□□ -0.01
SHROOM1-208ENST00000617339 LSM8O95777 96 aaKnown RBP14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 BAG2O95816 211 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 CACNB2Q08289 660 aaPredicted RBP14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 ISLR2Q6UXK2 745 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 TMEM174Q8WUU8 243 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 EDEM1Q92611 657 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 IKBKGQ9Y6K9 419 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 WASF2Q9Y6W5 498 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 SMIM28A0A1B0GU29 152 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 AMPD1P23109 780 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 SKIV2L2P42285 1042 aaKnown RBP14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 SOWAHAQ2M3V2 549 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 IRGCQ6NXR0 463 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 NOTUMQ6P988 496 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 SLC27A1Q6PCB7 646 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 NLRP9Q7RTR0 991 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 KDELC2Q7Z4H8 507 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 ATXN7L3BQ96GX2 97 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 C2orf71A6NGG8 1288 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 DNALI1O14645 258 aaPredicted RBP14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 DCTN3O75935 186 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 ZBED1O96006 694 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 MAP3K7CLP57077 242 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 MDH1BQ5I0G3 518 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 WSCD1Q658N2 575 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 CENPUQ71F23 418 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 ALLCQ8N6M5 410 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 ARRDC4Q8NCT1 418 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 MIPEPQ99797 713 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 PAAF1Q9BRP4 392 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 ASB7Q9H672 318 aa14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.99□□□□□ -0.012e-6■■■□□ 16.1
SHROOM1-208ENST00000617339 PRG3Q9Y2Y8 225 aaPredicted RBP14.99□□□□□ -0.01
SHROOM1-208ENST00000617339 PAPSS1O43252 624 aaPredicted RBP14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 HUS1O60921 280 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 ATP5HO75947 161 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 TRUB2O95900 331 aaKnown RBP14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 RPA3P35244 121 aaPredicted RBP14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 MLH1P40692 756 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 GBE1Q04446 702 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 TRIM32Q13049 653 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 CES3Q6UWW8 571 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 LRRC74BQ6ZQY2 392 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 PPM1NQ8N819 430 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 PDCD7Q8N8D1 485 aaKnown RBP14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 DEPDC1BQ8WUY9 529 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 SLC13A1Q9BZW2 595 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 LRCH1Q9Y2L9 728 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 A6NJR5 290 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 MAN1A1P33908 653 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 GRIA1P42261 906 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 NEK3P51956 506 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 SLC25A11Q02978 314 aaKnown RBP14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 ADIGQ0VDE8 80 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 OLIG2Q13516 323 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 LRRC36Q1X8D7 754 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 ACSBG2Q5FVE4 666 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 FBXO47Q5MNV8 452 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 TP53INP2Q8IXH6 220 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 ABI1Q8IZP0 508 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 FAM193BQ96PV7 902 aaPredicted RBP14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 KCNK16Q96T55 309 aa14.98□□□□□ -0.01
SHROOM1-208ENST00000617339 TRABDQ9H4I3 376 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms