RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SOX9P48436 509 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 MLLT6P55198 1093 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 STARD6P59095 220 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 PRKCQQ04759 706 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TBX2Q13207 712 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 ARID5BQ14865 1188 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TRIP4Q15650 581 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TDRD12Q587J7 1177 aaKnown RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 DCAF6Q58WW2 860 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 FAM102AQ5T9C2 384 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 ACAD10Q6JQN1 1059 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 Q6ZNB5 142 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TPRG1Q6ZUI0 275 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 MON1BQ7L1V2 547 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TMC6Q7Z403 805 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 OR8K1Q8NGG5 319 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 PLD4Q96BZ4 506 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 OTUB2Q96DC9 234 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 C1QTNF1Q9BXJ1 281 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 ECT2Q9H8V3 914 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TAS2R14Q9NYV8 317 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 ADAM22Q9P0K1 906 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 GOLGA8SH3BPF8 625 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 DDX3XO00571 662 aaKnown RBP eCLIP17.26■□□□□ 0.357e-17■■■■■ 43.9
CCDC28A-202ENST00000611852 MFAP3LO75121 409 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 DAB1O75553 588 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 NFATC1O95644 943 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 IGLV3-27P01718 113 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 CALB1P05937 261 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 PLEKP08567 350 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 KPNA1P52294 538 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 PITX1P78337 314 aaPredicted RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 C1QBPQ07021 282 aaKnown RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 BMP8AQ7Z5Y6 402 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TAC4Q86UU9 113 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 DRC7Q8IY82 874 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 CPA6Q8N4T0 437 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 ADAM32Q8TC27 787 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 SHDQ96IW2 340 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 SERPINB11Q96P15 392 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 DDX23Q9BUQ8 820 aaKnown RBP17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 DCLK3Q9C098 648 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 ARHGAP20Q9P2F6 1191 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TMEM59LQ9UK28 342 aa17.26■□□□□ 0.35
CCDC28A-202ENST00000611852 TRUB2O95900 331 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 IGLV3-25P01717 112 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 GZMAP12544 262 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 CORO1AP31146 461 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 MATKP42679 507 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 ADKP55263 362 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 GSCP56915 257 aaPredicted RBP17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 RNASE9P60153 205 aaKnown RBP17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 NNTQ13423 1086 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 PPP1R2P3Q6NXS1 205 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 RHBDF2Q6PJF5 856 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 WDR59Q6PJI9 974 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 PHLDB2Q86SQ0 1253 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 RALGPS2Q86X27 583 aaPredicted RBP17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 MCOLN2Q8IZK6 566 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 PBXIP1Q96AQ6 731 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 CHFRQ96EP1 664 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 C8orf33Q9H7E9 229 aaPredicted RBP17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 TBC1D17Q9HA65 648 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 ABHD10Q9NUJ1 306 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 WDR35Q9P2L0 1181 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 TLR6Q9Y2C9 796 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 ZNF510Q9Y2H8 683 aa17.25■□□□□ 0.35
CCDC28A-202ENST00000611852 TMCO5BA8MYB1 307 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 SPECC1L-ADORA2AF8WAN1 911 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 CYP17A1P05093 508 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 CD72P21854 359 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 CTHP32929 405 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 NOS2P35228 1153 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 HARS2P49590 506 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 TBX4P57082 545 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 CDK17Q00537 523 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 RING1Q06587 406 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 NR1H3Q13133 447 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 EIF4EBP2Q13542 120 aaPredicted RBP17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 DHCR24Q15392 516 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 TMEM31Q5JXX7 168 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 ARCQ7LC44 396 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 DENND1CQ8IV53 801 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 CNGA4Q8IV77 575 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 MSANTD3Q96H12 275 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 MFSD1Q9H3U5 465 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 METTL5Q9NRN9 209 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 ADAMTS1Q9UHI8 967 aa17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 AGO1Q9UL18 857 aaKnown RBP17.24■□□□□ 0.35
CCDC28A-202ENST00000611852 KANSL1LA0AUZ9 987 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 GOLGA6L3A6NEY3 463 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 PRR33A8MZF0 331 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 MAN2B1O00754 1011 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 IRAK2O43187 625 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 GJA4P35212 333 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 FLT3P36888 993 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 NUGGCQ68CJ6 796 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 TRNP1Q6NT89 227 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 TXNDC11Q6PKC3 985 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms