RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 MTAPQ13126 283 aa17.6■□□□□ 0.41
TRIM28-215ENST00000601150 TRIP4Q15650 581 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-215ENST00000601150 BEND5Q7L4P6 421 aa17.6■□□□□ 0.41
TRIM28-215ENST00000601150 CACNA2D4Q7Z3S7 1137 aa17.6■□□□□ 0.41
TRIM28-215ENST00000601150 ZNF677Q86XU0 584 aa17.6■□□□□ 0.41
TRIM28-215ENST00000601150 TMEM25Q86YD3 366 aa17.6■□□□□ 0.41
TRIM28-215ENST00000601150 IPO4Q8TEX9 1081 aaKnown RBP17.6■□□□□ 0.41
TRIM28-215ENST00000601150 SYNCQ9H7C4 482 aa17.6■□□□□ 0.41
TRIM28-215ENST00000601150 TJP2Q9UDY2 1190 aa17.6■□□□□ 0.41
TRIM28-215ENST00000601150 NOCTQ9UK39 431 aaKnown RBP17.6■□□□□ 0.41
TRIM28-215ENST00000601150 ATG2BQ96BY7 2078 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 LSM8O95777 96 aaKnown RBP17.59■□□□□ 0.41
TRIM28-215ENST00000601150 EGFP01133 1207 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 MMEP08473 750 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 EIF2DP41214 584 aaKnown RBP17.59■□□□□ 0.41
TRIM28-215ENST00000601150 HARS2P49590 506 aaKnown RBP17.59■□□□□ 0.41
TRIM28-215ENST00000601150 YWHAZP63104 245 aaKnown RBP17.59■□□□□ 0.41
TRIM28-215ENST00000601150 NHLH1Q02575 133 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 ANO4Q32M45 955 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 FBXO43Q4G163 708 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 PTPN20Q4JDL3 420 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 MAMSTRQ6ZN01 415 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 Q6ZS52 159 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 DENND1CQ8IV53 801 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 SPEM1Q8N4L4 309 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 NAP1L5Q96NT1 182 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-215ENST00000601150 POPDC2Q9HBU9 364 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 WDR35Q9P2L0 1181 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 AGO1Q9UL18 857 aaKnown RBP17.59■□□□□ 0.41
TRIM28-215ENST00000601150 NAALADL1Q9UQQ1 740 aa17.59■□□□□ 0.41
TRIM28-215ENST00000601150 A0A1W2PQC6 194 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-215ENST00000601150 CAPN9O14815 690 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 MSI1O43347 362 aaKnown RBP17.58■□□□□ 0.4
TRIM28-215ENST00000601150 ERBB2P04626 1255 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 GLI1P08151 1106 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 CHKAP35790 457 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 CCR3P51677 355 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 FANCCQ00597 558 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 CDR2Q01850 454 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 GAS6Q14393 721 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 EFHC1Q5JVL4 640 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 OR6B2Q6IFH4 312 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 MAML2Q8IZL2 1156 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-215ENST00000601150 DQX1Q8TE96 717 aaKnown RBP17.58■□□□□ 0.4
TRIM28-215ENST00000601150 SLC20A1Q8WUM9 679 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 ATOH1Q92858 354 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-215ENST00000601150 PNKPQ96T60 521 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 BBS2Q9BXC9 721 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 ASNSD1Q9NWL6 643 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 MARK1Q9P0L2 795 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 FBXO4Q9UKT5 387 aa17.58■□□□□ 0.4
TRIM28-215ENST00000601150 NEDD8-MDP1E9PL57 170 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 HSF2BPO75031 334 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 IGLV3-27P01718 113 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 SLC6A11P48066 632 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 TBX4P57082 545 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 NOMO3P69849 1222 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 RING1Q06587 406 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 NR1I3Q14994 352 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 TAF5Q15542 800 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 PREPLQ4J6C6 727 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-215ENST00000601150 SYPL2Q5VXT5 272 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 TPGS1Q6ZTW0 290 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 TOGARAM2Q6ZUX3 1019 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 FAM183BPQ6ZVS7 135 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 C12orf40Q86WS4 652 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 ERICH1Q86X53 443 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 ZDHHC17Q8IUH5 632 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 ETFBKMTQ8IXQ9 262 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 CPXM2Q8N436 756 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 MSANTD4Q8NCY6 345 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 FAM122AQ96E09 287 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 PIWIL1Q96J94 861 aaKnown RBP17.57■□□□□ 0.4
TRIM28-215ENST00000601150 SERPINB11Q96P15 392 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 PRMT8Q9NR22 394 aaPredicted RBP17.57■□□□□ 0.4
TRIM28-215ENST00000601150 FANCMQ8IYD8 2048 aa17.57■□□□□ 0.4
TRIM28-215ENST00000601150 WDFY4Q6ZS81 3184 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 CACNG3O60359 315 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 RNF40O75150 1001 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 TULP3O75386 442 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 LATS1O95835 1130 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 APODP05090 189 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 CCDC172P0C7W6 258 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 SP9P0CG40 484 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 TYRP14679 529 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 CHRNB2P17787 502 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 GABRB2P47870 512 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 CXCL12P48061 93 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 FMO1Q01740 532 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 SLC6A3Q01959 620 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 ARID5AQ03989 594 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 CSTF1Q05048 431 aaKnown RBP17.56■□□□□ 0.4
TRIM28-215ENST00000601150 NNTQ13423 1086 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 PPP2R5DQ14738 602 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 NAA35Q5VZE5 725 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 NUGGCQ68CJ6 796 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 OLFML1Q6UWY5 402 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 TRIM72Q6ZMU5 477 aa17.56■□□□□ 0.4
TRIM28-215ENST00000601150 UNC45BQ8IWX7 931 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms