RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 EXOC4Q96A65 974 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 ACBD6Q9BR61 282 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 NT5C1AQ9BXI3 368 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 PDCL3Q9H2J4 239 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 DPEP3Q9H4B8 488 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 FAM124BQ9H5Z6 455 aaPredicted RBP13.33□□□□□ -0.28
UPF1-208ENST00000600012 KCND1Q9NSA2 647 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 TMLHEQ9NVH6 421 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 TRIM10Q9UDY6 481 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 MAGED2Q9UNF1 606 aaPredicted RBP13.33□□□□□ -0.28
UPF1-208ENST00000600012 MYO16Q9Y6X6 1858 aa13.33□□□□□ -0.28
UPF1-208ENST00000600012 HELZP42694 1942 aaKnown RBP13.33□□□□□ -0.28
UPF1-208ENST00000600012 KIAA1549LQ6ZVL6 1849 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 OTOL1A6NHN0 477 aaPredicted RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 CCP110O43303 1012 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 GDF9O60383 454 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 EPN2O95208 641 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 ABL1P00519 1130 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 PDGFRBP09619 1106 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 DRD1P21728 446 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 ACAT1P24752 427 aaKnown RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 LMO2P25791 158 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 HOXC13P31276 330 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 GNL1P36915 607 aaPredicted RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 ARHGAP25P42331 645 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 GPR15P49685 360 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 LIMK1P53667 647 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 CLEC16AQ2KHT3 1053 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 FBXO43Q4G163 708 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 AASDHQ4L235 1098 aaPredicted RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 INTS6LQ5JSJ4 861 aaKnown RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 IL31Q6EBC2 164 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 SMYD5Q6GMV2 418 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 DPH6Q7L8W6 267 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 ACOT1Q86TX2 421 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 C12orf50Q8NA57 414 aaPredicted RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 ZNF606Q8WXB4 792 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 CHFRQ96EP1 664 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 TRMT2BQ96GJ1 504 aaKnown RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 HEXIM2Q96MH2 286 aaKnown RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 LACRTQ9GZZ8 138 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 LZTFL1Q9NQ48 299 aa13.32□□□□□ -0.28
UPF1-208ENST00000600012 DDX43Q9NXZ2 648 aaKnown RBP13.32□□□□□ -0.28
UPF1-208ENST00000600012 AXIN1O15169 862 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 ZNF500O60304 480 aaPredicted RBP13.31□□□□□ -0.28
UPF1-208ENST00000600012 RNF40O75150 1001 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 TADA3O75528 432 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 ZNF806P0C7X5 589 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 VDRP11473 427 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 ARSAP15289 507 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 PXNP49023 591 aaPredicted RBP13.31□□□□□ -0.28
UPF1-208ENST00000600012 PSMC1P62191 440 aaKnown RBP13.31□□□□□ -0.28
UPF1-208ENST00000600012 DDR2Q16832 855 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 CCDC142Q17RM4 750 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 SGO2Q562F6 1265 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 SDHAF4Q5VUM1 108 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 DENND1BQ6P3S1 775 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 UNC93AQ86WB7 457 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 CPA6Q8N4T0 437 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 CAMKK1Q8N5S9 505 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 C12orf29Q8N999 325 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 STKLD1Q8NE28 680 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 RIN3Q8TB24 985 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 MYRFLQ96LU7 910 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 P2RY13Q9BPV8 354 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 ARRDC1-AS1Q9H2J1 176 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 FAM49BQ9NUQ9 324 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 PCDHGA5Q9Y5G8 931 aa13.31□□□□□ -0.28
UPF1-208ENST00000600012 KMT2BQ9UMN6 2715 aaPredicted RBP13.31□□□□□ -0.28
UPF1-208ENST00000600012 CHD8Q9HCK8 2581 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 TRAV19A0A0A6YYK7 116 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 O00370 1275 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 GABRDO14764 452 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 MED7O43513 233 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 RTN2O75298 545 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 EGFP01133 1207 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 CYP1A1P04798 512 aaPredicted RBP13.3□□□□□ -0.28
UPF1-208ENST00000600012 CKMP06732 381 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 H2AFZP0C0S5 128 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 USP17L7P0C7H9 530 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 ABCB4P21439 1286 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 CYP2F1P24903 491 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 PCSK1P29120 753 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 LHX1P48742 406 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 GALCP54803 685 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 NOMO3P69849 1222 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 USP4Q13107 963 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 SF3A2Q15428 464 aaKnown RBP13.3□□□□□ -0.28
UPF1-208ENST00000600012 GOLGA7BQ2TAP0 167 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 CFAP221Q4G0U5 840 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 NAA35Q5VZE5 725 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 TRIM72Q6ZMU5 477 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 H2AFVQ71UI9 128 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 KBTBD6Q86V97 674 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 SPATA2LQ8IUW3 424 aaPredicted RBP13.3□□□□□ -0.28
UPF1-208ENST00000600012 C1orf131Q8NDD1 294 aaKnown RBP13.3□□□□□ -0.28
UPF1-208ENST00000600012 CYFIP2Q96F07 1278 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 FUBP3Q96I24 572 aaKnown RBP eCLIP13.3□□□□□ -0.28
UPF1-208ENST00000600012 PKMYT1Q99640 499 aa13.3□□□□□ -0.28
UPF1-208ENST00000600012 ECT2Q9H8V3 914 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms