RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 GNSP15586 552 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 DGKGP49619 791 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 ZNF132P52740 706 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 NUCB2P80303 420 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 Q6ZNB5 142 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 TPGS1Q6ZTW0 290 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 SV2AQ7L0J3 742 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 SMYD4Q8IYR2 804 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-212ENST00000597995 C12orf29Q8N999 325 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.18□□□□□ -0.3
TRIM28-212ENST00000597995 OSER1Q9NX31 292 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 DNMT3LQ9UJW3 386 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 CYP8B1Q9UNU6 501 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 ATRXP46100 2492 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 DMXL2Q8TDJ6 3036 aa13.18□□□□□ -0.3
TRIM28-212ENST00000597995 NPC1O15118 1278 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 GJB3O75712 270 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 ASPAP45381 313 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 PSEN1P49768 467 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 FAM193AP78312 1265 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 INCA1Q0VD86 236 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 PNOCQ13519 176 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 NFIL3Q16649 462 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 PLEKHG6Q3KR16 790 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 ZCWPW2Q504Y3 356 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 WDR45BQ5MNZ6 344 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 CEP135Q66GS9 1140 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 CLEC20AQ6ZU45 233 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 TOGARAM2Q6ZUX3 1019 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 GPRIN1Q7Z2K8 1008 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 RAB44Q7Z6P3 723 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-212ENST00000597995 TADA2BQ86TJ2 420 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 RGL4Q8IZJ4 473 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 GUF1Q8N442 669 aaKnown RBP13.17□□□□□ -0.3
TRIM28-212ENST00000597995 ERCC4Q92889 916 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-212ENST00000597995 CYFIP2Q96F07 1278 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 ZDHHC5Q9C0B5 715 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 CYP3A43Q9HB55 503 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 NMUR1Q9HB89 426 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 FAM49BQ9NUQ9 324 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 HMGXB4Q9UGU5 601 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 ZNF510Q9Y2H8 683 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 SLC27A6Q9Y2P4 619 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 NFE2L3Q9Y4A8 694 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 PKD1L2Q7Z442 2459 aa13.17□□□□□ -0.3
TRIM28-212ENST00000597995 CYP26A1O43174 497 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 CALUO43852 315 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-212ENST00000597995 STC2O76061 302 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 RARGP13631 454 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 ACO1P21399 889 aaKnown RBP13.16□□□□□ -0.3
TRIM28-212ENST00000597995 ADORA2BP29275 332 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 CD6P30203 668 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 KIF11P52732 1056 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 MCCD1P59942 119 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-212ENST00000597995 ORC1Q13415 861 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 E2F5Q15329 346 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 TRIP6Q15654 476 aaKnown RBP13.16□□□□□ -0.3
TRIM28-212ENST00000597995 C10orf120Q5SQS8 335 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 CHCHD4Q8N4Q1 142 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 DNASE2BQ8WZ79 361 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 CDK5RAP1Q96SZ6 601 aaKnown RBP13.16□□□□□ -0.3
TRIM28-212ENST00000597995 NT5C1AQ9BXI3 368 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 DNAI2Q9GZS0 605 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 CACNA2D2Q9NY47 1150 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 WSB2Q9NYS7 404 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-212ENST00000597995 CLIC5Q9NZA1 410 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 USP36Q9P275 1121 aaKnown RBP13.16□□□□□ -0.3
TRIM28-212ENST00000597995 RAD54BQ9Y620 910 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 STON1Q9Y6Q2 735 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 ZFYVE26Q68DK2 2539 aa13.16□□□□□ -0.3
TRIM28-212ENST00000597995 A0A1W2PQH9 124 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 WASH3PC4AMC7 463 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 MAPK13O15264 365 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 PENKP01210 267 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-212ENST00000597995 HLA-DRAP01903 254 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 CAPNS1P04632 268 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 RALAP11233 206 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 NR2F2P24468 414 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 CHKAP35790 457 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 PIK3CAP42336 1068 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 VAMP7P51809 220 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 COG7P83436 770 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 PPP3CAQ08209 521 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 ENPP2Q13822 863 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 STARD3Q14849 445 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 SPOPLQ6IQ16 392 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 LRSAM1Q6UWE0 723 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 KIAA1324Q6UXG2 1013 aaKnown RBP13.15□□□□□ -0.3
TRIM28-212ENST00000597995 CCDC186Q7Z3E2 898 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 SCD5Q86SK9 330 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 CADM4Q8NFZ8 388 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 OR2I1PQ8NGU4 316 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 SPATA20Q8TB22 786 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 ADAMTS14Q8WXS8 1223 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 TWNKQ96RR1 684 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 IMPG2Q9BZV3 1241 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 DCLK3Q9C098 648 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 PRDM16Q9HAZ2 1276 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 ITM2CQ9NQX7 267 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 NAGPAQ9UK23 515 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms