RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SERPINF2P08697 491 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 PPP1R2P41236 205 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 PTGER3P43115 390 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 RPL6Q02878 288 aaKnown RBP14.29□□□□□ -0.12
TRIM28-211ENST00000597968 LRRC63Q05C16 580 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 ENPP2Q13822 863 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 STARD3Q14849 445 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 SH3PXD2AQ5TCZ1 1133 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 TPGS1Q6ZTW0 290 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 SCD5Q86SK9 330 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 ZC3H3Q8IXZ2 948 aaKnown RBP14.29□□□□□ -0.12
TRIM28-211ENST00000597968 TMEFF1Q8IYR6 380 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 SCML4Q8N228 414 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 SLC4A11Q8NBS3 891 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 ELMO3Q96BJ8 720 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 PLD4Q96BZ4 506 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 TSG101Q99816 390 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 HOOK1Q9UJC3 728 aaKnown RBP14.29□□□□□ -0.12
TRIM28-211ENST00000597968 HCN2Q9UL51 889 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 MAPK8IP1Q9UQF2 711 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 EPG5Q9HCE0 2579 aa14.29□□□□□ -0.12
TRIM28-211ENST00000597968 IGHV1OR15-9A0A0B4J2B8 117 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 PATE3B3GLJ2 98 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 PRRT4C9JH25 899 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 PMM2O15305 246 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 LATS1O95835 1130 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 SYPP08247 313 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 ENGP17813 658 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 KCNA4P22459 653 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 TBXAS1P24557 533 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-211ENST00000597968 ATXN3P54252 364 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-211ENST00000597968 BCAT1P54687 386 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 RAD23BP54727 409 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 GFPT1Q06210 699 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-211ENST00000597968 ZNF33AQ06730 810 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 SLC14A1Q13336 389 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 SYCP2LQ5T4T6 812 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 ZNF658Q5TYW1 1059 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-211ENST00000597968 FYB2Q5VWT5 728 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 EGFLAMQ63HQ2 1017 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 SDK1Q7Z5N4 2213 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 PIGZQ86VD9 579 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 FAM217AQ8IXS0 508 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 NUP205Q92621 2012 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 ZNF419Q96HQ0 510 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-211ENST00000597968 CAPN10Q9HC96 672 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 TMEM74BQ9NUR3 256 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 HESX1Q9UBX0 185 aa14.28□□□□□ -0.12
TRIM28-211ENST00000597968 CIZ1Q9ULV3 898 aaPredicted RBP14.28□□□□□ -0.12
TRIM28-211ENST00000597968 THADAQ6YHU6 1953 aa14.27□□□□□ -0.12
TRIM28-211ENST00000597968 TMEM8BA6NDV4 472 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 H0Y626 953 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 XPO1O14980 1071 aaKnown RBP14.27□□□□□ -0.13
TRIM28-211ENST00000597968 SMC2O95347 1197 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 TRIM16O95361 564 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 ZBED1O96006 694 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 C7P10643 843 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 GNSP15586 552 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 NDUFV2P19404 249 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 OXTRP30559 389 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 RDXP35241 583 aaKnown RBP14.27□□□□□ -0.13
TRIM28-211ENST00000597968 YWHAGP61981 247 aaKnown RBP eCLIP14.27□□□□□ -0.13
TRIM28-211ENST00000597968 ZNF252P-AS1Q0IIN9 211 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 ZNF394Q53GI3 561 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 WDR45BQ5MNZ6 344 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 FOXR2Q6PJQ5 311 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 MIB1Q86YT6 1006 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 ELOA2Q8IYF1 753 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-211ENST00000597968 HDDC3Q8N4P3 179 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 ZNF557Q8N988 423 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-211ENST00000597968 CADM4Q8NFZ8 388 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 SPATA20Q8TB22 786 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 KCTD13Q8WZ19 329 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 SEMA4DQ92854 862 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 MRGPRX1Q96LB2 322 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 TIGD1Q96MW7 591 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 ZDHHC5Q9C0B5 715 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 GOLPH3LQ9H4A5 285 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 MMRN2Q9H8L6 949 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 METTL14Q9HCE5 456 aaKnown RBP14.27□□□□□ -0.13
TRIM28-211ENST00000597968 MARCH2Q9P0N8 246 aa14.27□□□□□ -0.13
TRIM28-211ENST00000597968 THAP10Q9P2Z0 257 aaPredicted RBP14.27□□□□□ -0.13
TRIM28-211ENST00000597968 HBS1LQ9Y450 684 aaKnown RBP14.27□□□□□ -0.13
TRIM28-211ENST00000597968 ABCA7Q8IZY2 2146 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 TRIM24O15164 1050 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 NDUFS2O75306 463 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 KLKB1P03952 638 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 PROS1P07225 676 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 SETSIPP0DME0 302 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 ITPKAP23677 461 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 CORO1AP31146 461 aaKnown RBP14.26□□□□□ -0.13
TRIM28-211ENST00000597968 PRCPP42785 496 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 HARS2P49590 506 aaKnown RBP14.26□□□□□ -0.13
TRIM28-211ENST00000597968 MFAP3P55082 362 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 BST2Q10589 180 aaKnown RBP14.26□□□□□ -0.13
TRIM28-211ENST00000597968 SEMA3BQ13214 749 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 CUL2Q13617 745 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 STILQ15468 1287 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 MPPE1Q53F39 396 aa14.26□□□□□ -0.13
TRIM28-211ENST00000597968 SGO2Q562F6 1265 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms