RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 EFHC2Q5JST6 749 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 RBM23Q86U06 439 aaKnown RBP15.86■□□□□ 0.13
TRIM28-209ENST00000597423 CTAGE6Q86UF2 777 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 TAC4Q86UU9 113 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 VSIG1Q86XK7 387 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 CPNE8Q86YQ8 564 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 CTAGE4Q8IX94 777 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 HSPH1Q92598 858 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 MRPS31Q92665 395 aaKnown RBP15.86■□□□□ 0.13
TRIM28-209ENST00000597423 NTAN1Q96AB6 310 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 PRO3102Q9H379 93 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 PRDM16Q9HAZ2 1276 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 ASAH2Q9NR71 780 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.86■□□□□ 0.13
TRIM28-209ENST00000597423 LMCD1Q9NZU5 365 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 MARCH2Q9P0N8 246 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 COX16Q9P0S2 106 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 TLR6Q9Y2C9 796 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 EFR3BQ9Y2G0 817 aa15.86■□□□□ 0.13
TRIM28-209ENST00000597423 GOLGA6L10A0A0M3HER8 536 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 LRRD1A4D1F6 860 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 PER2O15055 1255 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 TLR5O60602 858 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 TJP3O95049 919 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 SLU7O95391 586 aaKnown RBP15.85■□□□□ 0.13
TRIM28-209ENST00000597423 IGLV3-25P01717 112 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 KDELR1P24390 212 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 IL1R2P27930 398 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 COG7P83436 770 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 EFEMP1Q12805 493 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 ZNF211Q13398 564 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-209ENST00000597423 PPP2R5DQ14738 602 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 DAB2IPQ5VWQ8 1189 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 FAM131BQ86XD5 332 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 ADAM32Q8TC27 787 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 GDPD5Q8WTR4 605 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 CASP10Q92851 521 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 RNF25Q96BH1 459 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-209ENST00000597423 ZNF576Q9H609 170 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 HOMER3Q9NSC5 361 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 PIGVQ9NUD9 493 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.85■□□□□ 0.13
TRIM28-209ENST00000597423 DZANK1Q9NVP4 752 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 ZMYM5Q9UJ78 669 aa15.85■□□□□ 0.13
TRIM28-209ENST00000597423 HBS1LQ9Y450 684 aaKnown RBP15.85■□□□□ 0.13
TRIM28-209ENST00000597423 PTPRDP23468 1912 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 TMEM265A0A087WTH1 108 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 SOBPA7XYQ1 873 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 ZNF487B1APH4 448 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 ZNF197O14709 1029 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 CCL16O15467 120 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 IRAK2O43187 625 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 APOEP02649 317 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 FGGP02679 453 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 F11P03951 625 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 EPCAMP16422 314 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 TFE3P19532 575 aaPredicted RBP15.84■□□□□ 0.13
TRIM28-209ENST00000597423 DDX6P26196 483 aaKnown RBP eCLIP15.84■□□□□ 0.13
TRIM28-209ENST00000597423 PTPN7P35236 360 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 NRIP1P48552 1158 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 MARCKSL1P49006 195 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 CDH6P55285 790 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 TBX4P57082 545 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 TFDP2Q14188 446 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 TRIP4Q15650 581 aaPredicted RBP15.84■□□□□ 0.13
TRIM28-209ENST00000597423 SMTNL2Q2TAL5 461 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 ATP13A4Q4VNC1 1196 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 TFDP3Q5H9I0 405 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 KCNT1Q5JUK3 1230 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 SPOCD1Q6ZMY3 1216 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 UNC45BQ8IWX7 931 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 MS4A14Q96JA4 679 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 HAPLN3Q96S86 360 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 CORO1BQ9BR76 489 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 OSBPL8Q9BZF1 889 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 PRKD2Q9BZL6 878 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 DHX35Q9H5Z1 703 aaKnown RBP15.84■□□□□ 0.13
TRIM28-209ENST00000597423 NSUN3Q9H649 340 aaKnown RBP15.84■□□□□ 0.13
TRIM28-209ENST00000597423 OSER1Q9NX31 292 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 STIM2Q9P246 746 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 SFMBT1Q9UHJ3 866 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 RASAL2Q9UJF2 1139 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 FZD10Q9ULW2 581 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 AP4E1Q9UPM8 1137 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 HCFC2Q9Y5Z7 792 aa15.84■□□□□ 0.13
TRIM28-209ENST00000597423 SLC12A8A0AV02 714 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 H3BRJ5 948 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 KRIT1O00522 736 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 TCF4P15884 667 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 ZFXP17010 805 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-209ENST00000597423 GABRR2P28476 465 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 ARL4AP40617 200 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 PGFP49763 221 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 ITIH3Q06033 890 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 RING1Q06587 406 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 SCAPQ12770 1279 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 ARHGAP15Q53QZ3 475 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 DCAF12L1Q5VU92 463 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 NUGGCQ68CJ6 796 aa15.83■□□□□ 0.12
TRIM28-209ENST00000597423 CCDC70Q6NSX1 233 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms