RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 KIF11P52732 1056 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 KDSRQ06136 332 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 ORC1Q13415 861 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 ADAM9Q13443 819 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 ANO4Q32M45 955 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 ZCWPW2Q504Y3 356 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 DAB2IPQ5VWQ8 1189 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 PEAR1Q5VY43 1037 aaPredicted RBP10.96□□□□□ -0.65
VPS4B-207ENST00000591519 KRBA2Q6ZNG9 492 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 GPRIN1Q7Z2K8 1008 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 CYP2U1Q7Z449 544 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 FRMD1Q8N878 549 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 ZNF513Q8N8E2 541 aaPredicted RBP10.96□□□□□ -0.65
VPS4B-207ENST00000591519 NAT16Q8N8M0 369 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 TAS1R2Q8TE23 839 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 RLN3Q8WXF3 142 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 DUSP16Q9BY84 665 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 IMPG2Q9BZV3 1241 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 FAM124BQ9H5Z6 455 aaPredicted RBP10.96□□□□□ -0.65
VPS4B-207ENST00000591519 NMUR1Q9HB89 426 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 TMEM8AQ9HCN3 771 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 CD248Q9HCU0 757 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 FAM49BQ9NUQ9 324 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.96□□□□□ -0.65
VPS4B-207ENST00000591519 CLIC5Q9NZA1 410 aa10.96□□□□□ -0.65
VPS4B-207ENST00000591519 MBD1Q9UIS9 605 aaPredicted RBP10.96□□□□□ -0.65
VPS4B-207ENST00000591519 GON4LQ3T8J9 2241 aa10.96□□□□□ -0.66
VPS4B-207ENST00000591519 LAMA1P25391 3075 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 CHD8Q9HCK8 2581 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 A0A1W2PQF6 199 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 PATE3B3GLJ2 98 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 TRIM24O15164 1050 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 RARGP13631 454 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 KRT13P13646 458 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 CEACAM1P13688 526 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 TYRP14679 529 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 CSRP1P21291 193 aaKnown RBP10.95□□□□□ -0.66
VPS4B-207ENST00000591519 ACO1P21399 889 aaKnown RBP10.95□□□□□ -0.66
VPS4B-207ENST00000591519 ADORA2BP29275 332 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 NTSR1P30989 418 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 HOXD12P35452 270 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 GCGRP47871 477 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 DHPSP49366 369 aaPredicted RBP10.95□□□□□ -0.66
VPS4B-207ENST00000591519 GOLGA8FQ08AF8 430 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 GOLGA8DPQ0D2H9 430 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 EDRF1Q3B7T1 1238 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 KRT39Q6A163 491 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 CCDC186Q7Z3E2 898 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 SCD5Q86SK9 330 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 MIB1Q86YT6 1006 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 SYT12Q8IV01 421 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 FAM186BQ8IYM0 893 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 TTC39CQ8N584 583 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 HMGB4Q8WW32 186 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 PIGKQ92643 395 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 SPACA7Q96KW9 195 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 XPO6Q96QU8 1125 aaKnown RBP10.95□□□□□ -0.66
VPS4B-207ENST00000591519 DNAI2Q9GZS0 605 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 NIF3L1Q9GZT8 377 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 TMEM9BQ9NQ34 198 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.95□□□□□ -0.66
VPS4B-207ENST00000591519 TMEM74BQ9NUR3 256 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 DNMT3LQ9UJW3 386 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 LSM7Q9UK45 103 aaKnown RBP10.95□□□□□ -0.66
VPS4B-207ENST00000591519 MAPK8IP1Q9UQF2 711 aa10.95□□□□□ -0.66
VPS4B-207ENST00000591519 PI4KAP42356 2102 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 MAP1BP46821 2468 aaKnown RBP10.94□□□□□ -0.66
VPS4B-207ENST00000591519 TNRC6BQ9UPQ9 1833 aaKnown RBP10.94□□□□□ -0.66
VPS4B-207ENST00000591519 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 A0A1W2PQH9 124 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 TCRBV21S2A2A0A5A6 115 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 GFRA2O00451 464 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 CYP26A1O43174 497 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 KRT37O76014 449 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 STC2O76061 302 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 CLSTN1O94985 981 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 TRIM49P0CI25 452 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 TRIM49CP0CI26 452 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 IRF1P10914 325 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 GABRG2P18507 467 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 PTGER3P43115 390 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 LMAN2Q12907 356 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 PNOCQ13519 176 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 C10orf76Q5T2E6 689 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 PPP1R26Q5T8A7 1209 aaPredicted RBP10.94□□□□□ -0.66
VPS4B-207ENST00000591519 GRAMD4Q6IC98 578 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 PSAPL1Q6NUJ1 521 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 SLC23A3Q6PIS1 610 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 SLC36A4Q6YBV0 504 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 TADA2BQ86TJ2 420 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 TTC30AQ86WT1 665 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 TMEFF1Q8IYR6 380 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 CCDC150Q8NCX0 1101 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 ERCC4Q92889 916 aaPredicted RBP10.94□□□□□ -0.66
VPS4B-207ENST00000591519 IPO9Q96P70 1041 aaKnown RBP10.94□□□□□ -0.66
VPS4B-207ENST00000591519 CDK5RAP1Q96SZ6 601 aaKnown RBP10.94□□□□□ -0.66
VPS4B-207ENST00000591519 GABRG3Q99928 467 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 BBS2Q9BXC9 721 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 ZDHHC4Q9NPG8 344 aa10.94□□□□□ -0.66
VPS4B-207ENST00000591519 DNAJC17Q9NVM6 304 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms