RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 EFHC2Q5JST6 749 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 FAM171BQ6P995 826 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 NPNTQ6UXI9 565 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 PDZD4Q76G19 769 aaPredicted RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 BEND5Q7L4P6 421 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 ZNF598Q86UK7 904 aaKnown RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 ZC3H18Q86VM9 953 aaKnown RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 NLRP14Q86W24 1093 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 SLC43A3Q8NBI5 491 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 RNF169Q8NCN4 708 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 SLAIN1Q8ND83 568 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 PYROXD1Q8WU10 500 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 ARHGEF2Q92974 986 aaKnown RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 NTAN1Q96AB6 310 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 PGAP3Q96FM1 320 aaPredicted RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 PCED1BQ96HM7 432 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 SUSD3Q96L08 255 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 CSPG4P5Q96PW8 444 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 XPO6Q96QU8 1125 aaKnown RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 SMOQ99835 787 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 FTHL17Q9BXU8 183 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 ULBP1Q9BZM6 244 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 KLC2Q9H0B6 622 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 RAB6CQ9H0N0 254 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 PRO3102Q9H379 93 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 USP29Q9HBJ7 922 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 CSNK1G1Q9HCP0 422 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 TRMT13Q9NUP7 481 aaKnown RBP11.69□□□□□ -0.54
LIG3-204ENST00000585740 SENP1Q9P0U3 644 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 KANSL3Q9P2N6 904 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 GGA2Q9UJY4 613 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 PCDHB8Q9UN66 801 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 RAD54BQ9Y620 910 aa11.69□□□□□ -0.54
LIG3-204ENST00000585740 EXOC1LA0A1B0GW35 172 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 MYBPHLA2RUH7 354 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 DCDC2CA8MYV0 355 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 TMEM189-UBE2V1I3L0A0 370 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 M0QYT0 321 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 KCNN4O15554 427 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 TRAPPC3O43617 180 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 B3GAT3O94766 335 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 POMCP01189 267 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 LTFP02788 710 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 CKBP12277 381 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 CHN1P15882 459 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 MAGEA6P43360 314 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 IFI35P80217 286 aaPredicted RBP11.68□□□□□ -0.54
LIG3-204ENST00000585740 KCNJ11Q14654 390 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 ARL13BQ3SXY8 428 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 UBAP2Q5T6F2 1119 aaKnown RBP11.68□□□□□ -0.54
LIG3-204ENST00000585740 KIAA0319Q5VV43 1072 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 TTC19Q6DKK2 380 aaPredicted RBP11.68□□□□□ -0.54
LIG3-204ENST00000585740 GLB1LQ6UWU2 654 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 SLC24A5Q71RS6 500 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 TADA2BQ86TJ2 420 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 EXOC3L1Q86VI1 746 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 ZBED8Q8IZ13 594 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 CCDC185Q8N715 623 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 C3orf58Q8NDZ4 430 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 RSPH1Q8WYR4 309 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 MYLPFQ96A32 169 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 PWWP2AQ96N64 755 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 QKIQ96PU8 341 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIG3-204ENST00000585740 CCT8L2Q96SF2 557 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 CCDC134Q9H6E4 229 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 VPS37BQ9H9H4 285 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 LRRC4CQ9HCJ2 640 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 HMX1Q9NP08 348 aaPredicted RBP11.68□□□□□ -0.54
LIG3-204ENST00000585740 INTS9Q9NV88 658 aaKnown RBP11.68□□□□□ -0.54
LIG3-204ENST00000585740 MTMR10Q9NXD2 777 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 XPO7Q9UIA9 1087 aaKnown RBP11.68□□□□□ -0.54
LIG3-204ENST00000585740 PRDM4Q9UKN5 801 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 ZMYND8Q9ULU4 1186 aaPredicted RBP11.68□□□□□ -0.54
LIG3-204ENST00000585740 HEY1Q9Y5J3 304 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 CUL9Q8IWT3 2517 aa11.68□□□□□ -0.54
LIG3-204ENST00000585740 C5orf60A6NFR6 353 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 GCATO75600 419 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 BEST1O76090 585 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 STK10O94804 968 aaKnown RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 GSTA2P09210 222 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 TFE3P19532 575 aaPredicted RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 RBL1P28749 1068 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 FDFT1P37268 417 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 HCAR3P49019 387 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 MNX1P50219 401 aaPredicted RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 AFF1P51825 1210 aaKnown RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 FAM189BP81408 668 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 SCAPQ12770 1279 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 MTFR1Q15390 333 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 CCDC38Q502W7 563 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 ANKRD22Q5VYY1 191 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 HEATR6Q6AI08 1181 aaKnown RBP11.67□□□□□ -0.54
LIG3-204ENST00000585740 OVOS1Q6IE37 1185 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 C4orf50Q6ZRC1 276 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 FAM131BQ86XD5 332 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 PALM2Q8IXS6 379 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 CNPY4Q8N129 248 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 MCUQ8NE86 351 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 ZMIZ2Q8NF64 920 aa11.67□□□□□ -0.54
LIG3-204ENST00000585740 ZNF473Q8WTR7 871 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms