RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 TUBB6Q9BUF5 446 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 MYLK2Q9H1R3 596 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 DHX36Q9H2U1 1008 aaKnown RBP4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 VPS45Q9NRW7 570 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 STK32BQ9NY57 414 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 NKX1-2Q9UD57 310 aaPredicted RBP4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 PCDHA7Q9UN72 937 aa4.11□□□□□ -1.75
SMCHD1-206ENST00000581631 A0A087WYN8 130 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 TRIM43BA6NCK2 446 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 PHGDHO43175 533 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 SCGB1D2O95969 90 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 CD19P15391 556 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 TBXAS1P24557 533 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 KLRC1P26715 233 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 IDUAP35475 653 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 PTDSS1P48651 473 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 P2RX3P56373 397 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 ST3GAL2Q16842 350 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 C9orf50Q5SZB4 431 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 RBM44Q6ZP01 1051 aaKnown RBP4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 SLC44A5Q8NCS7 719 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 JDP2Q8WYK2 163 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 TRIM43Q96BQ3 446 aaPredicted RBP4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 KRTAP4-4Q9BYR3 166 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 USP29Q9HBJ7 922 aa4.1□□□□□ -1.75
SMCHD1-206ENST00000581631 F8W810 466 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 PYCARD-AS1I3L0S3 204 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 RGS10O43665 173 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 CTNND1O60716 968 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 GAS8-AS1O95177 125 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 SYF2O95926 243 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 FGF3P11487 239 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 HTR7P34969 479 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 COPAP53621 1224 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 TXNL4AP83876 142 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 PPP2R5AQ15172 486 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 NFE2Q16621 373 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 ASPHD1Q5U4P2 390 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 CAPRIN2Q6IMN6 1127 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 GRHL2Q6ISB3 625 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 SWSAP1Q6NVH7 229 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 B4GALNT4Q76KP1 1039 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 OVCH2Q7RTZ1 564 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 CUZD1Q86UP6 607 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 DNASE2BQ8WZ79 361 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 PRR11Q96HE9 360 aaPredicted RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 LMLNQ96KR4 655 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 SELENOOQ9BVL4 669 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 B3GNT5Q9BYG0 378 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 MOV10Q9HCE1 1003 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 CD93Q9NPY3 652 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 PAPOLBQ9NRJ5 636 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 STEAP1Q9UHE8 339 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 AGO2Q9UKV8 859 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 G3BP2Q9UN86 482 aaKnown RBP4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 EID1Q9Y6B2 187 aa4.09□□□□□ -1.75
SMCHD1-206ENST00000581631 CA12O43570 354 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 PIAS2O75928 621 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 USP19O94966 1318 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 GALNSP34059 522 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 JAK3P52333 1124 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 SLC12A2P55011 1212 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 PPATQ06203 517 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 DNASE1L3Q13609 305 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 KEAP1Q14145 624 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 ARHGEF7Q14155 803 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 SCN5AQ14524 2016 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 CLCA4Q14CN2 919 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 FAM102BQ5T8I3 360 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 NUGGCQ68CJ6 796 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 CXorf57Q6NSI4 855 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 NPNTQ6UXI9 565 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 SPATA2LQ8IUW3 424 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 IQCF1Q8N6M8 205 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 C11orf44Q8N8P7 122 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 NGDNQ8NEJ9 315 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 WFIKKN2Q8TEU8 576 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 RUNDC1Q96C34 613 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 NMD3Q96D46 503 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 DKK4Q9UBT3 224 aa4.08□□□□□ -1.76
SMCHD1-206ENST00000581631 NOTCH3Q9UM47 2321 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 COL15A1P39059 1388 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 FAM227AF5H4B4 570 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 TUSC2O75896 110 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 IL1R1P14778 569 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 NTSR1P30989 418 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 HOXA11P31270 313 aaPredicted RBP4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 EIF4A1P60842 406 aaKnown RBP4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 WDR5P61964 334 aaKnown RBP4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 MTAPQ13126 283 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 ANO6Q4KMQ2 910 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 PDXDC1Q6P996 788 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 FBXL14Q8N1E6 418 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 ZDHHC12Q96GR4 267 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 ZNF668Q96K58 619 aaPredicted RBP4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 SLITRK1Q96PX8 696 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 C22orf23Q9BZE7 217 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 SAP30LQ9HAJ7 183 aa4.07□□□□□ -1.76
SMCHD1-206ENST00000581631 ARL8BQ9NVJ2 186 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 150.3 ms