RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 PPIGQ13427 754 aaKnown RBP eCLIP10.94□□□□□ -0.662e-8■■■■■ 32.6
SS18-217ENST00000580958 PTK6Q13882 451 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 TFDP2Q14188 446 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 CASP8Q14790 479 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 DPYSL2Q16555 572 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 FAM153CQ494X1 144 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 ANKRD20A8PQ5CZ79 823 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 PPP6R3Q5H9R7 873 aaPredicted RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 EMBQ6PCB8 327 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 NPNTQ6UXI9 565 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 RNF19BQ6ZMZ0 732 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 SYDE1Q6ZW31 735 aaPredicted RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 C16orf59Q7L2K0 433 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 HDXQ7Z353 690 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 TAC4Q86UU9 113 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 NUP93Q8N1F7 819 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 PQLC3Q8N755 202 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 FAM71BQ8TC56 605 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 ACTL9Q8TC94 416 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 SPPL2BQ8TCT7 592 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 PIK3R5Q8WYR1 880 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 BADQ92934 168 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 RNF157Q96PX1 679 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 OXCT2Q9BYC2 517 aaPredicted RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 CRISPLD1Q9H336 500 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 PIGVQ9NUD9 493 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 RRN3Q9NYV6 651 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 MTRRQ9UBK8 725 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 FAM153AQ9UHL3 310 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 FZD10Q9ULW2 581 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 CDY1Q9Y6F8 540 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 MYO18AQ92614 2054 aaKnown RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 DOCK4Q8N1I0 1966 aa10.94□□□□□ -0.66
SS18-217ENST00000580958 MTCL1Q9Y4B5 1905 aaKnown RBP10.94□□□□□ -0.66
SS18-217ENST00000580958 A0A1W2PQH9 124 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 WDR27A2RRH5 827 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 GAS8O95995 478 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 FGBP02675 491 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 SOD2P04179 222 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 HAPLN1P10915 354 aaPredicted RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 PECAM1P16284 738 aaPredicted RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 IL4RP24394 825 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 PGFP49763 221 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 USP46P62068 366 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 ROR1Q01973 937 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 FPGSQ05932 587 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 NNTQ13423 1086 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 BYSLQ13895 437 aaKnown RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 TRIP13Q15645 432 aaPredicted RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 OASLQ15646 514 aaKnown RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 MGAT5BQ3V5L5 792 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 BTBD8Q5XKL5 378 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 KIAA1841Q6NSI8 718 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 DRICH1Q6PGQ1 229 aaPredicted RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 ZNF365Q70YC5 407 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 SCD5Q86SK9 330 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 VSIG1Q86XK7 387 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 C7orf61Q8IZ16 206 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 PYROXD2Q8N2H3 581 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 EIF1ADQ8N9N8 165 aaKnown RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 TTC13Q8NBP0 860 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 PCDH19Q8TAB3 1148 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 SLC35B2Q8TB61 432 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 GPR152Q8TDT2 470 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 DQX1Q8TE96 717 aaKnown RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 C2orf15Q8WU43 125 aaKnown RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 CAVIN3Q969G5 261 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 FAF2Q96CS3 445 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 TMEM169Q96HH4 297 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 YME1L1Q96TA2 773 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 SEPT5Q99719 369 aaPredicted RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 ZNF670Q9BS34 389 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 TRIM62Q9BVG3 475 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 FRMD8P1Q9BZ68 369 aaPredicted RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 NMUR1Q9HB89 426 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 WDR6Q9NNW5 1121 aaKnown RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 PRDM10Q9NQV6 1147 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 TMPRSS4Q9NRS4 437 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 DDIT4Q9NX09 232 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 MTMR10Q9NXD2 777 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 SPG21Q9NZD8 308 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 SAE1Q9UBE0 346 aaPredicted RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 PRKAG2Q9UGJ0 569 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 ASIC3Q9UHC3 531 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 FEZ2Q9UHY8 353 aaPredicted RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 SCML2Q9UQR0 700 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 ZNF148Q9UQR1 794 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 DRG1Q9Y295 367 aaKnown RBP10.93□□□□□ -0.66
SS18-217ENST00000580958 BACE2Q9Y5Z0 518 aa10.93□□□□□ -0.66
SS18-217ENST00000580958 ZNF487B1APH4 448 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 APOC4-APOC2K7ER74 178 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 C2CD2LO14523 706 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 MAP2K7O14733 419 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 APOL1O14791 398 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 KRT14P02533 472 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 APOC2P02655 101 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 NUDT7P0C024 238 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 TGM2P21980 687 aa10.92□□□□□ -0.66
SS18-217ENST00000580958 OR1D2P34982 312 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms