RNA–Protein interactions for RNA: ENST00000577393.1

PPP4R1-204, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 531 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-204	ENST00000577393	CCDC26	Q8TAB7	109 aa		27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	GOLGA1	Q92805	767 aa		27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	PLD4	Q96BZ4	506 aa		27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	BBS2	Q9BXC9	721 aa		27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	MARK1	Q9P0L2	795 aa		27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	WDR35	Q9P2L0	1181 aa		27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	LIMA1	Q9UHB6	759 aa	Known RBP	27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	AGO1	Q9UL18	857 aa	Known RBP	27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	PCDHGC3	Q9UN70	934 aa		27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393	HBS1L	Q9Y450	684 aa	Known RBP	27.59	■■■□□ 2.01
PPP4R1-204	ENST00000577393		A0A0A0MRY4	1105 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	TYR	P14679	529 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	GRIA2	P42262	883 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	COPB1	P53618	953 aa	Known RBP	27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	MSANTD2	Q6P1R3	559 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	TMEM110	Q86TL2	294 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	WDTC1	Q8N5D0	677 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	ANKRD20A12P	Q8NF67	263 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	USP33	Q8TEY7	942 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	PLCB1	Q9NQ66	1216 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	DEC1	Q9P2X7	70 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393	SLC8A2	Q9UPR5	921 aa		27.58	■■■□□ 2.01
PPP4R1-204	ENST00000577393		E5RJQ4	531 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	SART1	O43290	800 aa	Known RBP	27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	LMNA	P02545	664 aa	Known RBP	27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	ZNF18	P17022	549 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	FNTB	P49356	437 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	KLK7	P49862	253 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	BPIFB4	P59827	614 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	PDCL	Q13371	301 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	ANO6	Q4KMQ2	910 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	C2orf27A	Q580R0	203 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	FKBP15	Q5T1M5	1219 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	HEATR6	Q6AI08	1181 aa	Known RBP	27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	PASD1	Q8IV76	773 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	AOPEP	Q8N6M6	819 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	LHX5	Q9H2C1	402 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	HSD3B7	Q9H2F3	369 aa		27.57	■■■□□ 2
PPP4R1-204	ENST00000577393	TRIM24	O15164	1050 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	PAPSS1	O43252	624 aa	Predicted RBP	27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	MSI1	O43347	362 aa	Known RBP	27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	CACNG3	O60359	315 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	FYN	P06241	537 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	CDK11B	P21127	795 aa	Known RBP	27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	HOXA6	P31267	233 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	KRT9	P35527	623 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	CHKA	P35790	457 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	BHMT	Q93088	406 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	ACD	Q96AP0	544 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	FAM149B1	Q96BN6	582 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	XPO6	Q96QU8	1125 aa	Known RBP	27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	STK33	Q9BYT3	514 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	NAT10	Q9H0A0	1025 aa	Known RBP	27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	GAN	Q9H2C0	597 aa		27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	DNAJC17	Q9NVM6	304 aa	Known RBP	27.56	■■■□□ 2
PPP4R1-204	ENST00000577393	TBC1D3B	A6NDS4	549 aa		27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	NCAM1	P13591	858 aa		27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	TNFRSF4	P43489	277 aa		27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	HARS2	P49590	506 aa	Known RBP	27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	PREPL	Q4J6C6	727 aa	Predicted RBP	27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	SYT13	Q7L8C5	426 aa		27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	P2RY11	Q96G91	374 aa		27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	PLK2	Q9NYY3	685 aa		27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	TJP2	Q9UDY2	1190 aa		27.55	■■■□□ 2
PPP4R1-204	ENST00000577393	LRRC10B	A6NIK2	292 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	CHRM1	P11229	460 aa	Predicted RBP	27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	MRPS21	P82921	87 aa	Known RBP	27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	DMC1	Q14565	340 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	EMC10	Q5UCC4	262 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	GRAMD4	Q6IC98	578 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	KIAA1549L	Q6ZVL6	1849 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	LONP2	Q86WA8	852 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	C1orf131	Q8NDD1	294 aa	Known RBP	27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	PPP1R13B	Q96KQ4	1090 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	CPXM1	Q96SM3	734 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	NAALADL1	Q9UQQ1	740 aa		27.54	■■■□□ 2
PPP4R1-204	ENST00000577393	RIF1	Q5UIP0	2472 aa	Known RBP	27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	LGALS16	A8MUM7	142 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393		F8VZ95	297 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	CYP11B1	P15538	503 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	PXN	P49023	591 aa	Predicted RBP	27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	KLHL40	Q2TBA0	621 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	FAM217A	Q8IXS0	508 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	CPXM2	Q8N436	756 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	CCDC33	Q8N5R6	958 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	TERB1	Q8NA31	727 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	SUMF1	Q8NBK3	374 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	BPIFA3	Q9BQP9	254 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	FAM207A	Q9NSI2	230 aa	Predicted RBP	27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	SIK3	Q9Y2K2	1263 aa		27.53	■■■□□ 2
PPP4R1-204	ENST00000577393	PENK	P01210	267 aa	Predicted RBP	27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	TIE1	P35590	1138 aa		27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	KIR2DL1	P43626	348 aa	Predicted RBP	27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	FYB2	Q5VWT5	728 aa		27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	BEND5	Q7L4P6	421 aa		27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	APTX	Q7Z2E3	356 aa	Known RBP	27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	CAMKK1	Q8N5S9	505 aa		27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	DQX1	Q8TE96	717 aa	Known RBP	27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	NOX5	Q96PH1	765 aa		27.52	■■■□□ 2
PPP4R1-204	ENST00000577393	HHIP	Q96QV1	700 aa		27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms