RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SERAC1Q96JX3 654 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 LRRC37BQ96QE4 947 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 PTPN18Q99952 460 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 MAGEB5Q9BZ81 275 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 MYLK2Q9H1R3 596 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 RNF39Q9H2S5 420 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 SNX25Q9H3E2 840 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 PLAC1Q9HBJ0 212 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 SLC5A4Q9NY91 659 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 CLEC11AQ9Y240 323 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 TRDMT1O14717 391 aaKnown RBP10.45□□□□□ -0.74
VPS53-220ENST00000576149 XPOTO43592 962 aaKnown RBP10.45□□□□□ -0.74
VPS53-220ENST00000576149 LPXNO60711 386 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 DCTN3O75935 186 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 FAM155BO75949 473 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 METTL18O95568 372 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 ALDH3A1P30838 453 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 MAGEA3P43357 314 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 TAF6P49848 677 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 NEK3P51956 506 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 UBXN11Q5T124 520 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 STRADAQ7RTN6 431 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 CCDC185Q8N715 623 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 APPL2Q8NEU8 664 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 APOPT1Q96IL0 206 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 CSPG4P5Q96PW8 444 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 KCTD15Q96SI1 283 aaPredicted RBP10.45□□□□□ -0.74
VPS53-220ENST00000576149 C12orf65Q9H3J6 166 aaKnown RBP10.45□□□□□ -0.74
VPS53-220ENST00000576149 MANSC1Q9H8J5 431 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 NOD2Q9HC29 1040 aa10.45□□□□□ -0.74
VPS53-220ENST00000576149 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.45□□□□□ -0.74
VPS53-220ENST00000576149 ZC3H7BQ9UGR2 993 aaKnown RBP10.45□□□□□ -0.74
VPS53-220ENST00000576149 WDR91A4D1P6 747 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 CAPN15O75808 1086 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 ATP5HO75947 161 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 TPSB2P20231 275 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 PRKCHP24723 683 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 ETV4P43268 484 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 GTF2A1P52655 376 aaPredicted RBP10.44□□□□□ -0.74
VPS53-220ENST00000576149 SOX4Q06945 474 aaPredicted RBP10.44□□□□□ -0.74
VPS53-220ENST00000576149 TPSAB1Q15661 275 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 EFHC1Q5JVL4 640 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 TTC39BQ5VTQ0 682 aaPredicted RBP10.44□□□□□ -0.74
VPS53-220ENST00000576149 KCNT2Q6UVM3 1135 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 ZNF534Q76KX8 674 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 LRRC6Q86X45 466 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 VPS52Q8N1B4 723 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 KIF2BQ8N4N8 673 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 ZNF398Q8TD17 642 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 ERP27Q96DN0 273 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 QKIQ96PU8 341 aaKnown RBP eCLIP10.44□□□□□ -0.74
VPS53-220ENST00000576149 DNAI2Q9GZS0 605 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 GOLGA2P5Q9HBQ8 144 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 TXLNGQ9NUQ3 528 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 ZNF180Q9UJW8 692 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 TRIM33Q9UPN9 1127 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 SCN4AP35499 1836 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 CXorf49A8MYA2 514 aaPredicted RBP10.44□□□□□ -0.74
VPS53-220ENST00000576149 HAS3O00219 553 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 C2CD2LO14523 706 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 XPO1O14980 1071 aaKnown RBP10.44□□□□□ -0.74
VPS53-220ENST00000576149 TREHO43280 583 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 KRT16P08779 473 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 GSTA2P09210 222 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 PYGBP11216 843 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 SLC8A1P32418 973 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 MATKP42679 507 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 PSEN2P49810 448 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 SV2CQ496J9 727 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 FYB2Q5VWT5 728 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 NCBP2-AS2Q69YL0 99 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 TLK2Q86UE8 772 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 CHSY1Q86X52 802 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 PPM1NQ8N819 430 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 TNIP3Q96KP6 325 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 SIGLEC10Q96LC7 697 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 DTLQ9NZJ0 730 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 BAIAP2L1Q9UHR4 511 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 USP3Q9Y6I4 520 aa10.44□□□□□ -0.74
VPS53-220ENST00000576149 HUS1O60921 280 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 APOEP02649 317 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 SNRPAP09012 282 aaKnown RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 ZNF865P0CJ78 1059 aaPredicted RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 WARSP23381 471 aaKnown RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 TKTP29401 623 aaKnown RBP10.43□□□□□ -0.74
VPS53-220ENST00000576149 LILRA4P59901 499 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 FKBP1BP68106 108 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 SLC25A52Q3SY17 297 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 SPDYAQ5MJ70 313 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 MORN1Q5T089 497 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 SPRYD7Q5W111 196 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 OLFML2BQ68BL8 750 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 PIGZQ86VD9 579 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 OSTM1Q86WC4 334 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 CTAGE3PQ8IX95 158 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 ADGRF2Q8IZF7 708 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 B3GALNT2Q8NCR0 500 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 PTPRN2Q92932 1015 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 OLFM3Q96PB7 478 aa10.43□□□□□ -0.74
VPS53-220ENST00000576149 HNRNPABQ99729 332 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms