RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CNTNAP5Q8WYK1 1306 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 DOPEY1Q5JWR5 2465 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 PRRC2BQ5JSZ5 2229 aaKnown RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 A0A087WWL8 130 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 H7C0S8 307 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 GRM6O15303 877 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 KCNQ3O43525 872 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 HSPA4LO95757 839 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 GRPP07492 148 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 ADRB2P07550 413 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 DBHP09172 617 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 GAAP10253 952 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 ACADMP11310 421 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 ACVR2AP27037 513 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 GUCY1A2P33402 732 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 EIF4A2Q14240 407 aaKnown RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 WTAPQ15007 396 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 PHF19Q5T6S3 580 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 ATPAF1Q5TC12 328 aaPredicted RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 NUGGCQ68CJ6 796 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 VASNQ6EMK4 673 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 CPLX4Q7Z7G2 160 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 NSUN4Q96CB9 384 aaKnown RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 VMP1Q96GC9 406 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 MS4A7Q9GZW8 240 aaPredicted RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 SIL1Q9H173 461 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 BCAS3Q9H6U6 928 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 CARS2Q9HA77 564 aaKnown RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 EIF2B3Q9NR50 452 aaKnown RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 SIDT1Q9NXL6 827 aaKnown RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 NOP53Q9NZM5 478 aaKnown RBP6.32□□□□□ -1.4
VPS53-219ENST00000576019 HSF4Q9ULV5 492 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 GABRQQ9UN88 632 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 ZNF711Q9Y462 761 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 ATP6V0A2Q9Y487 856 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 MGAMO43451 1857 aa6.32□□□□□ -1.4
VPS53-219ENST00000576019 LOC400499M0QZD8 3231 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 GAKO14976 1311 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 CCL15-CCL14A0A0B4J2E2 113 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 PRSS29PA6NIE9 313 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 NOTOA8MTQ0 251 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 E7EVH7 732 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 H3BNC9 293 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 PIK3R2O00459 728 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 DNAJB5O75953 348 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 GDF11O95390 407 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 SCGB1D1O95968 90 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 CNPP09543 421 aaKnown RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 BTF3P20290 206 aaKnown RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 MUTP22033 750 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 HOXC13P31276 330 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 ATICP31939 592 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 ADCY8P40145 1251 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 MLH1P40692 756 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 GLRBP48167 497 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS53-219ENST00000576019 PPP2R5CQ13362 524 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 SLC29A2Q14542 456 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 RASA2Q15283 850 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 GPR68Q15743 365 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 TBCEQ15813 527 aaPredicted RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 CCL15Q16663 113 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 SKIDA1Q1XH10 827 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 SLC5A9Q2M3M2 681 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 CTXN3Q4LDR2 81 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 SLC10A5Q5PT55 438 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 FYB2Q5VWT5 728 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 USP17L6PQ6QN14 398 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 PRR23BQ6ZRT6 265 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 RAB11FIP2Q7L804 512 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 SYT13Q7L8C5 426 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 ARMC8Q8IUR7 673 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 FAM126BQ8IXS8 530 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 NDUFAF2Q8N183 169 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 ANKS4BQ8N8V4 417 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 FLCNQ8NFG4 579 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 NETO1Q8TDF5 533 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 BADQ92934 168 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 SDCCAG3Q96C92 435 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 WDR92Q96MX6 357 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 NACC1Q96RE7 527 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 CRAMP1Q96RY5 1269 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 RBM15Q96T37 977 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS53-219ENST00000576019 TACO1Q9BSH4 297 aaKnown RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 C11orf54Q9H0W9 315 aaPredicted RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 NOD2Q9HC29 1040 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 ATP8A2Q9NTI2 1148 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 USP40Q9NVE5 1235 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 SPATA6Q9NWH7 488 aaPredicted RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 LMCD1Q9NZU5 365 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 PI4KBQ9UBF8 816 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 ZNF112Q9UJU3 913 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 DBR1Q9UK59 544 aaKnown RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 ACAD8Q9UKU7 415 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 ZHX1Q9UKY1 873 aaPredicted RBP6.31□□□□□ -1.4
VPS53-219ENST00000576019 CAMK2AQ9UQM7 478 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 DNAJC16Q9Y2G8 782 aa6.31□□□□□ -1.4
VPS53-219ENST00000576019 DTNAQ9Y4J8 743 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms